RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 AMIGO3Q86WK7 504 aa20.83■□□□□ 0.92
RTN4-201ENST00000317610 CENPHQ9H3R5 247 aa20.83■□□□□ 0.92
RTN4-201ENST00000317610 AJAP1Q9UKB5 411 aaPredicted RBP20.83■□□□□ 0.92
RTN4-201ENST00000317610 GTPBP10A4D1E9 387 aaKnown RBP20.82■□□□□ 0.92
RTN4-201ENST00000317610 DDX3XO00571 662 aaKnown RBP eCLIP20.82■□□□□ 0.922e-35■□□□□ 10.1
RTN4-201ENST00000317610 DAPK3O43293 454 aa20.82■□□□□ 0.92
RTN4-201ENST00000317610 AKAP3O75969 853 aa20.82■□□□□ 0.92
RTN4-201ENST00000317610 STAT3P40763 770 aa20.82■□□□□ 0.92
RTN4-201ENST00000317610 GSCP56915 257 aaPredicted RBP20.82■□□□□ 0.92
RTN4-201ENST00000317610 RNF187Q5TA31 235 aaPredicted RBP20.82■□□□□ 0.92
RTN4-201ENST00000317610 DNAAF5Q86Y56 855 aa20.82■□□□□ 0.92
RTN4-201ENST00000317610 SYT2Q8N9I0 419 aaPredicted RBP20.82■□□□□ 0.92
RTN4-201ENST00000317610 ZHX3Q9H4I2 956 aa20.82■□□□□ 0.92
RTN4-201ENST00000317610 FAM114A2Q9NRY5 505 aa20.82■□□□□ 0.92
RTN4-201ENST00000317610 DDX20Q9UHI6 824 aaKnown RBP20.82■□□□□ 0.92
RTN4-201ENST00000317610 AMACRQ9UHK6 382 aa20.82■□□□□ 0.92
RTN4-201ENST00000317610 TMCO5BA8MYB1 307 aa20.82■□□□□ 0.92
RTN4-201ENST00000317610 RASSF9O75901 435 aa20.82■□□□□ 0.92
RTN4-201ENST00000317610 SFR1Q86XK3 245 aa20.82■□□□□ 0.92
RTN4-201ENST00000317610 CATSPER3Q86XQ3 398 aa20.82■□□□□ 0.92
RTN4-201ENST00000317610 CCDC13Q8IYE1 715 aa20.82■□□□□ 0.92
RTN4-201ENST00000317610 OLIG1Q8TAK6 271 aa20.82■□□□□ 0.92
RTN4-201ENST00000317610 UBLCP1Q8WVY7 318 aaPredicted RBP20.82■□□□□ 0.92
RTN4-201ENST00000317610 ANO3Q9BYT9 981 aa20.82■□□□□ 0.92
RTN4-201ENST00000317610 ACTR5Q9H9F9 607 aaPredicted RBP20.82■□□□□ 0.92
RTN4-201ENST00000317610 SLC16A2P36021 539 aa20.81■□□□□ 0.92
RTN4-201ENST00000317610 ETNPPLQ8TBG4 499 aa20.81■□□□□ 0.92
RTN4-201ENST00000317610 CRYGNQ8WXF5 182 aa20.81■□□□□ 0.92
RTN4-201ENST00000317610 SLC35C1Q96A29 364 aa20.81■□□□□ 0.92
RTN4-201ENST00000317610 REEP2Q9BRK0 252 aa20.81■□□□□ 0.92
RTN4-201ENST00000317610 TYW1Q9NV66 732 aaKnown RBP20.81■□□□□ 0.92
RTN4-201ENST00000317610 CNOT8Q9UFF9 292 aaKnown RBP20.81■□□□□ 0.92
RTN4-201ENST00000317610 GGA1Q9UJY5 639 aa20.81■□□□□ 0.92
RTN4-201ENST00000317610 NCANO14594 1321 aa20.81■□□□□ 0.92
RTN4-201ENST00000317610 FERP16591 822 aa20.81■□□□□ 0.92
RTN4-201ENST00000317610 RFC4P35249 363 aa20.81■□□□□ 0.92
RTN4-201ENST00000317610 SETQ01105 290 aaPredicted RBP20.81■□□□□ 0.92
RTN4-201ENST00000317610 SLC30A5Q8TAD4 765 aa20.81■□□□□ 0.92
RTN4-201ENST00000317610 TXLNGYQ9BZA5 131 aa20.81■□□□□ 0.92
RTN4-201ENST00000317610 ASTN1O14525 1302 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 USP17L15C9J2P7 530 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 USP17L13C9JLJ4 530 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 USP17L11C9JVI0 530 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 USP17L18D6R9N7 530 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 USP17L22D6RA61 530 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 USP17L17D6RBQ6 530 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 USP17L19D6RCP7 530 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 USP17L20D6RJB6 530 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 F8VZ95 297 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 TTI1O43156 1089 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 NR3C1P04150 777 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 SPATA31C1P0DKV0 1188 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 RPA1P27694 616 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 USP17L24Q0WX57 530 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 PTPROQ16827 1216 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 USP17L6PQ6QN14 398 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 PTF1AQ7RTS3 328 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 ARMC9Q7Z3E5 817 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 PROCA1Q8NCQ7 364 aaPredicted RBP20.8■□□□□ 0.92
RTN4-201ENST00000317610 BTAF1O14981 1849 aa20.8■□□□□ 0.92
RTN4-201ENST00000317610 TBX3O15119 743 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 RPL13P26373 211 aaKnown RBP20.79■□□□□ 0.92
RTN4-201ENST00000317610 PSMC6P62333 389 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 DCAF17Q5H9S7 520 aaPredicted RBP20.79■□□□□ 0.92
RTN4-201ENST00000317610 DAAM2Q86T65 1068 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 UIMC1Q96RL1 719 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 MYCBPQ99417 103 aaPredicted RBP20.79■□□□□ 0.92
RTN4-201ENST00000317610 NOVA2Q9UNW9 492 aaKnown RBP20.79■□□□□ 0.92
RTN4-201ENST00000317610 DIS3Q9Y2L1 958 aaKnown RBP20.79■□□□□ 0.92
RTN4-201ENST00000317610 PPFIA2O75334 1257 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 TMOD1P28289 359 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 SHMT1P34896 483 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 PICALMQ13492 652 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 QPCTQ16769 361 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 CCDC121Q6ZUS5 278 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 CNBD1Q8NA66 436 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 ERMNQ8TAM6 284 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 RAPGEF5Q92565 580 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 GCNT4Q9P109 453 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 SERPINB13Q9UIV8 391 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 DNM3Q9UQ16 869 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 UTP11Q9Y3A2 253 aaKnown RBP20.79■□□□□ 0.92
RTN4-201ENST00000317610 QSER1Q2KHR3 1735 aa20.79■□□□□ 0.92
RTN4-201ENST00000317610 AP3B2Q13367 1082 aa20.78■□□□□ 0.92
RTN4-201ENST00000317610 KCTD1Q719H9 257 aa20.78■□□□□ 0.92
RTN4-201ENST00000317610 LNX1Q8TBB1 728 aaPredicted RBP20.78■□□□□ 0.92
RTN4-201ENST00000317610 ATP8B4Q8TF62 1192 aa20.78■□□□□ 0.92
RTN4-201ENST00000317610 TLCD1Q96CP7 247 aa20.78■□□□□ 0.92
RTN4-201ENST00000317610 BORCS6Q96GS4 357 aa20.78■□□□□ 0.92
RTN4-201ENST00000317610 DDX4Q9NQI0 724 aaKnown RBP20.78■□□□□ 0.92
RTN4-201ENST00000317610 AMFRQ9UKV5 643 aa20.78■□□□□ 0.92
RTN4-201ENST00000317610 TAF1LQ8IZX4 1826 aa20.78■□□□□ 0.92
RTN4-201ENST00000317610 GALCP54803 685 aa20.78■□□□□ 0.92
RTN4-201ENST00000317610 EIF3BP55884 814 aaKnown RBP20.78■□□□□ 0.92
RTN4-201ENST00000317610 DHX9Q08211 1270 aaKnown RBP20.78■□□□□ 0.92
RTN4-201ENST00000317610 PABPC4Q13310 644 aaKnown RBP eCLIP20.78■□□□□ 0.922e-7■■■□□ 16.8
RTN4-201ENST00000317610 BYSLQ13895 437 aaKnown RBP20.78■□□□□ 0.92
RTN4-201ENST00000317610 QRICH1Q2TAL8 776 aa20.78■□□□□ 0.92
RTN4-201ENST00000317610 Q4G0T1 1027 aa20.78■□□□□ 0.92
RTN4-201ENST00000317610 CERKQ8TCT0 537 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms