RNA–Protein interactions for RNA: ENSMUST00000041639.6

Syne1-201, Transcript of Nesprin-1, mousemouse

TSL 1 (best) BASIC

Gene Syne1, Length 6,990 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Syne1-201ENSMUST00000041639 Rnf6Q9DBU5 667 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Gtf2ird1Q9JI57 1104 aaKnown RBP10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Tnni1Q9WUZ5 187 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 PapolbQ9WVP6 641 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Abcc3B2RX12 1523 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Cdc27A2A6Q5 825 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 GsnP13020 780 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Zbtb8osQ505B7 168 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Ttf2Q5NC05 1138 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Krt40Q6IFX3 439 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Dnajc8Q6NZB0 253 aaKnown RBP10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Palm2Q8BR92 376 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Sept10Q8C650 452 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Plekha4Q8VC98 588 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Creld2Q9CYA0 350 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Nde1Q9CZA6 344 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Sucla2Q9Z2I9 463 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Gm3402K7N5P2 326 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Usp35M0QWN7 1009 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Arhgap17Q3UIA2 846 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Hsph1Q61699 858 aaKnown RBP10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Ppp2r2aQ6P1F6 447 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Tlr11Q6R5P0 926 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Baiap3Q80TT2 1134 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Bpifb6Q8BU51 449 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Abi1Q8CBW3 481 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Champ1Q8K327 802 aaKnown RBP10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Lrrc14Q8VC16 493 aa10.53□□□□□ -0.72
Syne1-201ENSMUST00000041639 Gm7356A0A087WSA6 508 aa10.52□□□□□ -0.72
Syne1-201ENSMUST00000041639 Ccdc194A0A140LIT1 234 aa10.52□□□□□ -0.72
Syne1-201ENSMUST00000041639 Gm8994E9PV04 411 aaKnown RBP10.52□□□□□ -0.72
Syne1-201ENSMUST00000041639 Trim5E9PV98 497 aa10.52□□□□□ -0.72
Syne1-201ENSMUST00000041639 Gm5926E9PWJ8 236 aa10.52□□□□□ -0.72
Syne1-201ENSMUST00000041639 Gnl1P36916 607 aa10.52□□□□□ -0.72
Syne1-201ENSMUST00000041639 Lig1P37913 916 aa10.52□□□□□ -0.72
Syne1-201ENSMUST00000041639 Slc12a1P55014 1095 aa10.52□□□□□ -0.72
Syne1-201ENSMUST00000041639 Ifnl2Q4VK74 193 aa10.52□□□□□ -0.72
Syne1-201ENSMUST00000041639 Ppp1r12bQ8BG95 976 aa10.52□□□□□ -0.72
Syne1-201ENSMUST00000041639 4921524L21RikQ9D5T2 438 aa10.52□□□□□ -0.72
Syne1-201ENSMUST00000041639 Cpb2Q9JHH6 422 aa10.52□□□□□ -0.72
Syne1-201ENSMUST00000041639 Tlr2Q9QUN7 784 aa10.52□□□□□ -0.72
Syne1-201ENSMUST00000041639 Dbn1Q9QXS6 706 aa10.52□□□□□ -0.72
Syne1-201ENSMUST00000041639 Dync1i2O88487 612 aaKnown RBP10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Tpp1O89023 562 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 GfapP03995 430 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Sh3gl1Q62419 368 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Recql4Q75NR7 1216 aaKnown RBP10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Tmem134Q8R0J4 195 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Pdlim2Q8R1G6 349 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Olfr390Q8VEZ7 311 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Hdac11Q91WA3 347 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Spats2lQ91WJ7 558 aaKnown RBP10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Uap1Q91YN5 522 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Iqcf1Q9D9K8 182 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Cacna2d1O08532 1103 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Exoc4O35382 975 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Tac1P41539 130 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Arl4cP61208 192 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Rasa3Q60790 834 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Lamc2Q61092 1191 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 AlcamQ61490 583 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Ube2oQ6ZPJ3 1288 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 H6pdQ8CFX1 789 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Tasp1Q8R1G1 420 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Nrbf2Q8VCQ3 287 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Usp14Q9JMA1 493 aaKnown RBP10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 A630010A05RikA9C473 232 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Pou5f1P20263 352 aaKnown RBP10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Atp11aP98197 1187 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Trmt10cQ3UFY8 414 aaKnown RBP10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Trim38Q5SZ99 471 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Sh3tc2Q80VA5 1289 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Gga1Q8R0H9 635 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Mis18aQ9CZJ6 204 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Peg12Q9WVA7 283 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Cog1Q9Z160 980 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Celf1P28659 486 aaKnown RBP10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Arpp19P56212 112 aaKnown RBP10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Senp6Q6P7W0 1132 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Suds3Q8BR65 328 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Q91WD4 421 aa10.52□□□□□ -0.73
Syne1-201ENSMUST00000041639 Veph1A1A535 833 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 Akap17bA2A3V1 959 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 Serpinb3cA2RSF9 386 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 PtgdrP70263 357 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 Ctdnep1Q3TP92 244 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 Zfp341Q6PGC9 846 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 Heatr3Q8BQM4 679 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 Cep95Q8BVV7 827 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 Setd3Q91WC0 594 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 Afg3l1Q920A7 789 aaKnown RBP10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 NelfcdQ922L6 591 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 Mrpl11Q9CQF0 192 aaKnown RBP10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 Drap1Q9D6N5 205 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 Synj2Q9D2G5 1434 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 PltpP55065 493 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 Irx2P81066 474 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 Parp3Q3ULW8 533 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 SmtnQ921U8 923 aa10.51□□□□□ -0.73
Syne1-201ENSMUST00000041639 Slc12a6Q924N4 1150 aa10.51□□□□□ -0.73
Retrieved 100 of 22,080 RNA–protein pairs in 15.1 ms