RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	SOL2	P37262	315 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	MUP3	P38734	546 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	MSE1	P48525	536 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	MDM34	P53083	459 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	RSM27	P53305	110 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	COS6	P53344	381 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	YDR249C	Q03787	373 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	MTQ2	Q03920	221 aa	Predicted RBP	4.63	□□□□□ -1.67
NUP116	YMR047C	MRL1	Q06815	381 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	NUS1	Q12063	375 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	KCS1	Q12494	1050 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	YOR019W	Q99248	730 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	AAC3	P18238	307 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	VPS33	P20795	691 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	ECM25	P32525	599 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	VPS17	P32913	551 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	SLM4	P38247	162 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	TAT2	P38967	592 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	CAF16	P43569	289 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	LOH1	P47055	219 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	YJR149W	P47177	404 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	YGR015C	P53208	328 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	FRE4	P53746	719 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	YMR265C	Q03508	461 aa	Known RBP	4.63	□□□□□ -1.67
NUP116	YMR047C	MUS81	Q04149	632 aa	Predicted RBP	4.63	□□□□□ -1.67
NUP116	YMR047C	URH1	Q04179	340 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	GIM5	Q04493	163 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	DPB4	Q04603	196 aa	Known RBP	4.63	□□□□□ -1.67
NUP116	YMR047C	GSH2	Q08220	491 aa		4.63	□□□□□ -1.67
NUP116	YMR047C	MRP2	P10663	115 aa	Predicted RBP	4.62	□□□□□ -1.67
NUP116	YMR047C	FUS3	P16892	353 aa	Known RBP	4.62	□□□□□ -1.67
NUP116	YMR047C	CLG1	P35190	452 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	YGR210C	P42942	411 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	YFR020W	P43600	232 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	TIM13	P53299	105 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	REG1	Q00816	1014 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	MCH5	Q08777	521 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	YDR056C	Q12025	205 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	PUS9	Q12069	462 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	TEL1	P38110	2787 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	GPM1	P00950	247 aa	Known RBP	4.62	□□□□□ -1.67
NUP116	YMR047C	SPS4	P09937	338 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	YCL068C	P25593	260 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	MAE1	P36013	669 aa	Known RBP	4.62	□□□□□ -1.67
NUP116	YMR047C	MCM7	P38132	845 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	YHR127W	P38833	243 aa	Known RBP	4.62	□□□□□ -1.67
NUP116	YMR047C	FAU1	P40099	211 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	YIL086C	P40503	102 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	YIL067C	P40514	678 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	FMP32	P43557	207 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	AIM24	P47127	394 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	UBX4	P54730	416 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	LGE1	Q02796	332 aa	Known RBP	4.62	□□□□□ -1.67
NUP116	YMR047C	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
NUP116	YMR047C	YOR114W	Q12219	294 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	CMK1	P27466	446 aa	Known RBP	4.62	□□□□□ -1.67
NUP116	YMR047C	PEX3	P28795	441 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	DHR2	P36009	735 aa	Predicted RBP	4.62	□□□□□ -1.67
NUP116	YMR047C	FMP46	P36141	133 aa	Known RBP	4.62	□□□□□ -1.67
NUP116	YMR047C	UTP25	P40498	721 aa	Known RBP	4.62	□□□□□ -1.67
NUP116	YMR047C	CAB2	P40506	365 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	BOL2	P53082	120 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	FRE7	Q12333	620 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	LDB17	Q12342	491 aa		4.62	□□□□□ -1.67
NUP116	YMR047C	FUM1	P08417	488 aa	Known RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	SYP1	P25623	870 aa	Known RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	VAM7	P32912	316 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	EMC3	P36039	253 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
NUP116	YMR047C	EFM1	P38732	585 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	ERP5	P38819	212 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	GPP1	P41277	250 aa	Known RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	SPG5	P42933	373 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	YJR120W	P47157	116 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	SMP3	Q04174	516 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	DCR2	Q05924	578 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	RPN6	Q12377	434 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	DCN1	Q12395	269 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	AHA1	Q12449	350 aa	Known RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	YBL029C-A	Q3E756	94 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	ADE5,7	P07244	802 aa	Known RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	HSP26	P15992	214 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
NUP116	YMR047C	KGD1	P20967	1014 aa	Known RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	RER1	P25560	188 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	NVJ1	P38881	321 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	PTI1	P39927	425 aa	Predicted RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	MRPL13	Q02204	264 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	GIP3	Q03016	1276 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	YDR476C	Q03362	224 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	DFG5	Q05031	458 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	CYK3	Q07533	885 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	BRR2	P32639	2163 aa	Known RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	PHO4	P07270	312 aa	Known RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	RPS18A	P0CX55	146 aa	Known RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	RPS18B	P0CX56	146 aa	Predicted RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	CPR4	P25334	318 aa		4.61	□□□□□ -1.67
NUP116	YMR047C	MCM5	P29496	775 aa	Known RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	RPS1A	P33442	255 aa	Known RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	SOF1	P33750	489 aa	Known RBP	4.61	□□□□□ -1.67
NUP116	YMR047C	SLM1	P40485	686 aa		4.61	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 23.9 ms