RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 UNC45AQ9H3U1 944 aa21.8■■□□□ 1.08
UPF1-212ENST00000601689 SLC4A7Q9Y6M7 1214 aa21.8■■□□□ 1.08
UPF1-212ENST00000601689 RANBP2P49792 3224 aaKnown RBP21.8■■□□□ 1.08
UPF1-212ENST00000601689 NEMFO60524 1076 aa21.79■■□□□ 1.08
UPF1-212ENST00000601689 BAIAP3O94812 1187 aa21.79■■□□□ 1.08
UPF1-212ENST00000601689 GJB2P29033 226 aa21.79■■□□□ 1.08
UPF1-212ENST00000601689 ORC2Q13416 577 aaPredicted RBP21.79■■□□□ 1.08
UPF1-212ENST00000601689 C16orf59Q7L2K0 433 aa21.79■■□□□ 1.08
UPF1-212ENST00000601689 TRMT1LQ7Z2T5 733 aaKnown RBP21.79■■□□□ 1.08
UPF1-212ENST00000601689 RPAINQ86UA6 219 aa21.79■■□□□ 1.08
UPF1-212ENST00000601689 KCNMB3Q9NPA1 279 aa21.79■■□□□ 1.08
UPF1-212ENST00000601689 PCDHA12Q9UN75 941 aa21.79■■□□□ 1.08
UPF1-212ENST00000601689 PCDHA2Q9Y5H9 948 aa21.79■■□□□ 1.08
UPF1-212ENST00000601689 MBLAC1A4D2B0 266 aaPredicted RBP21.78■■□□□ 1.08
UPF1-212ENST00000601689 ATP2B1P20020 1258 aa21.78■■□□□ 1.08
UPF1-212ENST00000601689 TMOD1P28289 359 aa21.78■■□□□ 1.08
UPF1-212ENST00000601689 KCNJ6P48051 423 aa21.78■■□□□ 1.08
UPF1-212ENST00000601689 TRAPPC10P48553 1259 aa21.78■■□□□ 1.08
UPF1-212ENST00000601689 PPP2R5CQ13362 524 aa21.78■■□□□ 1.08
UPF1-212ENST00000601689 IKBKEQ14164 716 aa21.78■■□□□ 1.08
UPF1-212ENST00000601689 HIC1Q14526 733 aa21.78■■□□□ 1.08
UPF1-212ENST00000601689 TRIM71Q2Q1W2 868 aaKnown RBP21.78■■□□□ 1.08
UPF1-212ENST00000601689 EARS2Q5JPH6 523 aaKnown RBP21.78■■□□□ 1.08
UPF1-212ENST00000601689 MCTP1Q6DN14 999 aa21.78■■□□□ 1.08
UPF1-212ENST00000601689 CNKSR3Q6P9H4 555 aa21.78■■□□□ 1.08
UPF1-212ENST00000601689 NOSTRINQ8IVI9 506 aa21.78■■□□□ 1.08
UPF1-212ENST00000601689 NME8Q8N427 588 aa21.78■■□□□ 1.08
UPF1-212ENST00000601689 MAGEB2O15479 319 aa21.77■■□□□ 1.08
UPF1-212ENST00000601689 KLRC1P26715 233 aa21.77■■□□□ 1.08
UPF1-212ENST00000601689 POTEDQ86YR6 584 aa21.77■■□□□ 1.08
UPF1-212ENST00000601689 IGSF9BQ9UPX0 1349 aa21.77■■□□□ 1.07
UPF1-212ENST00000601689 SMIM35A0A1B0GVV1 85 aa21.76■■□□□ 1.07
UPF1-212ENST00000601689 KIF28PB7ZC32 967 aa21.76■■□□□ 1.07
UPF1-212ENST00000601689 CD2BP2O95400 341 aaKnown RBP21.76■■□□□ 1.07
UPF1-212ENST00000601689 OATP04181 439 aa21.76■■□□□ 1.07
UPF1-212ENST00000601689 CTSHP09668 335 aa21.76■■□□□ 1.07
UPF1-212ENST00000601689 PSMC5P62195 406 aa21.76■■□□□ 1.07
UPF1-212ENST00000601689 MTHFD1LQ6UB35 978 aa21.76■■□□□ 1.07
UPF1-212ENST00000601689 DNAJB3Q8WWF6 145 aa21.76■■□□□ 1.07
UPF1-212ENST00000601689 SEPT8Q92599 483 aa21.76■■□□□ 1.07
UPF1-212ENST00000601689 GJA10Q969M2 543 aa21.76■■□□□ 1.07
UPF1-212ENST00000601689 LRCH3Q96II8 777 aa21.76■■□□□ 1.07
UPF1-212ENST00000601689 FAM49AQ9H0Q0 323 aaPredicted RBP21.76■■□□□ 1.07
UPF1-212ENST00000601689 MSRAQ9UJ68 235 aa21.76■■□□□ 1.07
UPF1-212ENST00000601689 EVPLQ92817 2033 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 ABHD14A-ACY1A0A1B0GW23 586 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 FAM205CA6NFA0 338 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 CXCL10P02778 98 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 P4HBP07237 508 aaKnown RBP21.75■■□□□ 1.07
UPF1-212ENST00000601689 PDCP20941 246 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 MCM7P33993 719 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 PRKCEQ02156 737 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 RAB30Q15771 203 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 XKR3Q5GH77 459 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 FAM26DQ5JW98 314 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 ZNF697Q5TEC3 545 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 LARP1BQ659C4 914 aaKnown RBP21.75■■□□□ 1.07
UPF1-212ENST00000601689 NCAPH2Q6IBW4 605 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 ZNF710Q8N1W2 664 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 PHOSPHO2Q8TCD6 241 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 APBB2Q92870 758 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 WNT8BQ93098 351 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 SLC9A7Q96T83 725 aa21.75■■□□□ 1.07
UPF1-212ENST00000601689 SOX1O00570 391 aaPredicted RBP21.74■■□□□ 1.07
UPF1-212ENST00000601689 TXKP42681 527 aa21.74■■□□□ 1.07
UPF1-212ENST00000601689 QARSP47897 775 aaKnown RBP21.74■■□□□ 1.07
UPF1-212ENST00000601689 EPHA7Q15375 998 aa21.74■■□□□ 1.07
UPF1-212ENST00000601689 ODR4Q5SWX8 454 aa21.74■■□□□ 1.07
UPF1-212ENST00000601689 MARCH8Q5T0T0 291 aa21.74■■□□□ 1.07
UPF1-212ENST00000601689 RASIP1Q5U651 963 aa21.74■■□□□ 1.07
UPF1-212ENST00000601689 EXOC8Q8IYI6 725 aa21.74■■□□□ 1.07
UPF1-212ENST00000601689 METTL13Q8N6R0 699 aa21.74■■□□□ 1.07
UPF1-212ENST00000601689 USP38Q8NB14 1042 aa21.74■■□□□ 1.07
UPF1-212ENST00000601689 JPH2Q9BR39 696 aaPredicted RBP21.74■■□□□ 1.07
UPF1-212ENST00000601689 TTC12Q9H892 705 aaPredicted RBP21.74■■□□□ 1.07
UPF1-212ENST00000601689 SEPT9Q9UHD8 586 aaPredicted RBP21.74■■□□□ 1.07
UPF1-212ENST00000601689 TET1Q8NFU7 2136 aa21.73■■□□□ 1.07
UPF1-212ENST00000601689 NBNO60934 754 aa21.73■■□□□ 1.07
UPF1-212ENST00000601689 ATP2A2P16615 1042 aaKnown RBP21.73■■□□□ 1.07
UPF1-212ENST00000601689 ATP4AP20648 1035 aa21.73■■□□□ 1.07
UPF1-212ENST00000601689 U2AF2P26368 475 aaKnown RBP eCLIP21.73■■□□□ 1.07
UPF1-212ENST00000601689 MRPS6P82932 125 aaKnown RBP21.73■■□□□ 1.07
UPF1-212ENST00000601689 TBC1D8BQ0IIM8 1120 aa21.73■■□□□ 1.07
UPF1-212ENST00000601689 TMEM266Q2M3C6 531 aa21.73■■□□□ 1.07
UPF1-212ENST00000601689 TTC38Q5R3I4 469 aa21.73■■□□□ 1.07
UPF1-212ENST00000601689 B3GNT9Q6UX72 402 aa21.73■■□□□ 1.07
UPF1-212ENST00000601689 RUFY4Q6ZNE9 571 aa21.73■■□□□ 1.07
UPF1-212ENST00000601689 OTUD6AQ7L8S5 288 aa21.73■■□□□ 1.07
UPF1-212ENST00000601689 NEK9Q8TD19 979 aa21.73■■□□□ 1.07
UPF1-212ENST00000601689 TRAPPC12Q8WVT3 735 aa21.73■■□□□ 1.07
UPF1-212ENST00000601689 HAS1Q92839 578 aa21.73■■□□□ 1.07
UPF1-212ENST00000601689 MAP7D2Q96T17 732 aa21.73■■□□□ 1.07
UPF1-212ENST00000601689 TMEM265A0A087WTH1 108 aa21.72■■□□□ 1.07
UPF1-212ENST00000601689 DNM2P50570 870 aa21.72■■□□□ 1.07
UPF1-212ENST00000601689 FAM109BQ6ICB4 259 aaPredicted RBP21.72■■□□□ 1.07
UPF1-212ENST00000601689 FAM43BQ6ZT52 329 aaPredicted RBP21.72■■□□□ 1.07
UPF1-212ENST00000601689 HSCBQ8IWL3 235 aa21.72■■□□□ 1.07
UPF1-212ENST00000601689 RAB34Q9BZG1 259 aa21.72■■□□□ 1.07
UPF1-212ENST00000601689 VAV3Q9UKW4 847 aa21.72■■□□□ 1.07
UPF1-212ENST00000601689 TRPV2Q9Y5S1 764 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms