RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 PPP2R5CQ13362 524 aa18.99■□□□□ 0.63
TRIM28-215ENST00000601150 RASIP1Q5U651 963 aa18.99■□□□□ 0.63
TRIM28-215ENST00000601150 RUFY4Q6ZNE9 571 aa18.99■□□□□ 0.63
TRIM28-215ENST00000601150 NOSTRINQ8IVI9 506 aa18.99■□□□□ 0.63
TRIM28-215ENST00000601150 TRAPPC12Q8WVT3 735 aa18.99■□□□□ 0.63
TRIM28-215ENST00000601150 BBXQ8WY36 941 aaPredicted RBP18.99■□□□□ 0.63
TRIM28-215ENST00000601150 HAS1Q92839 578 aa18.99■□□□□ 0.63
TRIM28-215ENST00000601150 FAM167AQ96KS9 214 aa18.99■□□□□ 0.63
TRIM28-215ENST00000601150 FTOQ9C0B1 505 aaKnown RBP eCLIP18.99■□□□□ 0.635e-6■■■■□ 23.7
TRIM28-215ENST00000601150 VAV3Q9UKW4 847 aa18.99■□□□□ 0.63
TRIM28-215ENST00000601150 SIP14410 1827 aa18.99■□□□□ 0.63
TRIM28-215ENST00000601150 EVPLQ92817 2033 aa18.98■□□□□ 0.63
TRIM28-215ENST00000601150 WNT7AO00755 349 aa18.98■□□□□ 0.63
TRIM28-215ENST00000601150 NEMFO60524 1076 aa18.98■□□□□ 0.63
TRIM28-215ENST00000601150 ACTN1P12814 892 aa18.98■□□□□ 0.63
TRIM28-215ENST00000601150 CUL4AQ13619 759 aa18.98■□□□□ 0.63
TRIM28-215ENST00000601150 CALCRLQ16602 461 aa18.98■□□□□ 0.63
TRIM28-215ENST00000601150 ZNF484Q5JVG2 852 aa18.98■□□□□ 0.63
TRIM28-215ENST00000601150 OTOP2Q7RTS6 562 aa18.98■□□□□ 0.63
TRIM28-215ENST00000601150 RPAINQ86UA6 219 aa18.98■□□□□ 0.63
TRIM28-215ENST00000601150 RSPH3Q86UC2 560 aa18.98■□□□□ 0.63
TRIM28-215ENST00000601150 LRCH3Q96II8 777 aa18.98■□□□□ 0.63
TRIM28-215ENST00000601150 PCDHA2Q9Y5H9 948 aa18.98■□□□□ 0.63
TRIM28-215ENST00000601150 KIF28PB7ZC32 967 aa18.97■□□□□ 0.63
TRIM28-215ENST00000601150 ZNF862O60290 1169 aa18.97■□□□□ 0.63
TRIM28-215ENST00000601150 NBNO60934 754 aa18.97■□□□□ 0.63
TRIM28-215ENST00000601150 CXCL10P02778 98 aa18.97■□□□□ 0.63
TRIM28-215ENST00000601150 RPLP2P05387 115 aaKnown RBP18.97■□□□□ 0.63
TRIM28-215ENST00000601150 ATP2B1P20020 1258 aa18.97■□□□□ 0.63
TRIM28-215ENST00000601150 U2AF2P26368 475 aaKnown RBP eCLIP18.97■□□□□ 0.637e-13■■■□□ 18.7
TRIM28-215ENST00000601150 GPNMBQ14956 572 aa18.97■□□□□ 0.63
TRIM28-215ENST00000601150 UGCGQ16739 394 aa18.97■□□□□ 0.63
TRIM28-215ENST00000601150 MTHFD1LQ6UB35 978 aa18.97■□□□□ 0.63
TRIM28-215ENST00000601150 NOL7Q9UMY1 257 aaKnown RBP18.97■□□□□ 0.63
TRIM28-215ENST00000601150 LOXHD1Q8IVV2 1947 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 H3BQV1 296 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 OATP04181 439 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 CTSHP09668 335 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 KLRC1P26715 233 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 MCM7P33993 719 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 TRAPPC10P48553 1259 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 PRKCEQ02156 737 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 ORC2Q13416 577 aaPredicted RBP18.96■□□□□ 0.63
TRIM28-215ENST00000601150 MBTPS1Q14703 1052 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 FAM26DQ5JW98 314 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 TRMT1LQ7Z2T5 733 aaKnown RBP18.96■□□□□ 0.63
TRIM28-215ENST00000601150 DNAJB3Q8WWF6 145 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 ZBTB10Q96DT7 871 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 NRBP2Q9NSY0 501 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 CXXC1Q9P0U4 656 aaPredicted RBP18.96■□□□□ 0.63
TRIM28-215ENST00000601150 CEP131Q9UPN4 1083 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 GBF1Q92538 1859 aa18.96■□□□□ 0.63
TRIM28-215ENST00000601150 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.95■□□□□ 0.62
TRIM28-215ENST00000601150 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.95■□□□□ 0.62
TRIM28-215ENST00000601150 ZBTB42B2RXF5 422 aa18.95■□□□□ 0.62
TRIM28-215ENST00000601150 EML1O00423 815 aa18.95■□□□□ 0.62
TRIM28-215ENST00000601150 SMAD3P84022 425 aaKnown RBP18.95■□□□□ 0.62
TRIM28-215ENST00000601150 TTC38Q5R3I4 469 aa18.95■□□□□ 0.62
TRIM28-215ENST00000601150 CNKSR3Q6P9H4 555 aa18.95■□□□□ 0.62
TRIM28-215ENST00000601150 MTMR9Q96QG7 549 aa18.95■□□□□ 0.62
TRIM28-215ENST00000601150 FAM49AQ9H0Q0 323 aaPredicted RBP18.95■□□□□ 0.62
TRIM28-215ENST00000601150 PCDHA12Q9UN75 941 aa18.95■□□□□ 0.62
TRIM28-215ENST00000601150 SMIM35A0A1B0GVV1 85 aa18.94■□□□□ 0.62
TRIM28-215ENST00000601150 ZBBXA8MT70 800 aa18.94■□□□□ 0.62
TRIM28-215ENST00000601150 K7ELQ4 463 aaPredicted RBP18.94■□□□□ 0.62
TRIM28-215ENST00000601150 BAIAP3O94812 1187 aa18.94■□□□□ 0.62
TRIM28-215ENST00000601150 PSMC5P62195 406 aa18.94■□□□□ 0.62
TRIM28-215ENST00000601150 SPIRE1Q08AE8 756 aa18.94■□□□□ 0.62
TRIM28-215ENST00000601150 EPHA7Q15375 998 aa18.94■□□□□ 0.62
TRIM28-215ENST00000601150 MCTP1Q6DN14 999 aa18.94■□□□□ 0.62
TRIM28-215ENST00000601150 NCAPH2Q6IBW4 605 aa18.94■□□□□ 0.62
TRIM28-215ENST00000601150 GPR153Q6NV75 609 aa18.94■□□□□ 0.62
TRIM28-215ENST00000601150 TTC12Q9H892 705 aaPredicted RBP18.94■□□□□ 0.62
TRIM28-215ENST00000601150 SLC4A7Q9Y6M7 1214 aa18.94■□□□□ 0.62
TRIM28-215ENST00000601150 MICAL3Q7RTP6 2002 aa18.93■□□□□ 0.62
TRIM28-215ENST00000601150 DKC1O60832 514 aaKnown RBP eCLIP18.93■□□□□ 0.62
TRIM28-215ENST00000601150 C22orf31O95567 290 aa18.93■□□□□ 0.62
TRIM28-215ENST00000601150 CHRNA1P02708 482 aa18.93■□□□□ 0.62
TRIM28-215ENST00000601150 TXKP42681 527 aa18.93■□□□□ 0.62
TRIM28-215ENST00000601150 QARSP47897 775 aaKnown RBP18.93■□□□□ 0.62
TRIM28-215ENST00000601150 MRPS6P82932 125 aaKnown RBP18.93■□□□□ 0.62
TRIM28-215ENST00000601150 MGAT3Q09327 533 aa18.93■□□□□ 0.62
TRIM28-215ENST00000601150 ZNF174Q15697 407 aa18.93■□□□□ 0.62
TRIM28-215ENST00000601150 XKR3Q5GH77 459 aa18.93■□□□□ 0.62
TRIM28-215ENST00000601150 IER5Q5VY09 327 aa18.93■□□□□ 0.62
TRIM28-215ENST00000601150 LARP1BQ659C4 914 aaKnown RBP18.93■□□□□ 0.62
TRIM28-215ENST00000601150 NME8Q8N427 588 aa18.93■□□□□ 0.62
TRIM28-215ENST00000601150 BANK1Q8NDB2 785 aa18.93■□□□□ 0.62
TRIM28-215ENST00000601150 SNX21Q969T3 373 aa18.93■□□□□ 0.62
TRIM28-215ENST00000601150 TMEM60Q9H2L4 133 aa18.93■□□□□ 0.62
TRIM28-215ENST00000601150 SEPT9Q9UHD8 586 aaPredicted RBP18.93■□□□□ 0.62
TRIM28-215ENST00000601150 CDY2AQ9Y6F7 541 aa18.93■□□□□ 0.62
TRIM28-215ENST00000601150 PTPRSQ13332 1948 aa18.93■□□□□ 0.62
TRIM28-215ENST00000601150 M0QZ92 97 aa18.92■□□□□ 0.62
TRIM28-215ENST00000601150 MAGEB2O15479 319 aa18.92■□□□□ 0.62
TRIM28-215ENST00000601150 P4HBP07237 508 aaKnown RBP18.92■□□□□ 0.62
TRIM28-215ENST00000601150 PLEKHG4Q58EX7 1191 aa18.92■□□□□ 0.62
TRIM28-215ENST00000601150 INTS4Q96HW7 963 aaKnown RBP18.92■□□□□ 0.62
TRIM28-215ENST00000601150 NIFKQ9BYG3 293 aaKnown RBP18.92■□□□□ 0.62
TRIM28-215ENST00000601150 ARID2Q68CP9 1835 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms