RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 GALNT17Q6IS24 598 aa14.35□□□□□ -0.11
UPF1-208ENST00000600012 FCHSD1Q86WN1 690 aa14.35□□□□□ -0.11
UPF1-208ENST00000600012 SUGCTQ9HAC7 445 aa14.35□□□□□ -0.11
UPF1-208ENST00000600012 TMEM260Q9NX78 707 aa14.35□□□□□ -0.11
UPF1-208ENST00000600012 MTUS1Q9ULD2 1270 aa14.35□□□□□ -0.11
UPF1-208ENST00000600012 C17orf102A2RUQ5 167 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 DDX11L8A8MPP1 907 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 RSPH10B2B2RC85 870 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 GOLGA6L22H0YM25 854 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 H3BRB1 525 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 NOP56O00567 594 aaKnown RBP14.34□□□□□ -0.11
UPF1-208ENST00000600012 STAM2O75886 525 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 AMHP03971 560 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 LGALS2P05162 132 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 RSPH10BP0C881 870 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 HOXC8P31273 242 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 THPOP40225 353 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 JAKMIP3Q5VZ66 844 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 FAM117BQ6P1L5 589 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 PIK3AP1Q6ZUJ8 805 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 REXO1Q8N1G1 1221 aaKnown RBP14.34□□□□□ -0.11
UPF1-208ENST00000600012 DBF4BQ8NFT6 615 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 CUL5Q93034 780 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 ATP6V0A1Q93050 837 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 PGBD1Q96JS3 809 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 TUT1Q9H6E5 874 aaKnown RBP14.34□□□□□ -0.11
UPF1-208ENST00000600012 RIC8AQ9NPQ8 531 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 RAPGEFL1Q9UHV5 662 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 INSL6Q9Y581 213 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 CLIC4Q9Y696 253 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 FRMPD4Q14CM0 1322 aa14.34□□□□□ -0.11
UPF1-208ENST00000600012 XIRP2A4UGR9 3374 aa14.33□□□□□ -0.11
UPF1-208ENST00000600012 CAND2O75155 1236 aa14.33□□□□□ -0.12
UPF1-208ENST00000600012 PRPF40AO75400 957 aaKnown RBP14.33□□□□□ -0.12
UPF1-208ENST00000600012 SMIM10L2AP0DMW4 78 aa14.33□□□□□ -0.12
UPF1-208ENST00000600012 SMIM10L2BP0DMW5 78 aa14.33□□□□□ -0.12
UPF1-208ENST00000600012 ATP2B1P20020 1258 aa14.33□□□□□ -0.12
UPF1-208ENST00000600012 ICAM3P32942 547 aa14.33□□□□□ -0.12
UPF1-208ENST00000600012 TOB1P50616 345 aaPredicted RBP14.33□□□□□ -0.12
UPF1-208ENST00000600012 MKRN4PQ13434 485 aaPredicted RBP14.33□□□□□ -0.12
UPF1-208ENST00000600012 NEDD9Q14511 834 aa14.33□□□□□ -0.12
UPF1-208ENST00000600012 PLEKHG4Q58EX7 1191 aa14.33□□□□□ -0.12
UPF1-208ENST00000600012 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.33□□□□□ -0.12
UPF1-208ENST00000600012 MYOCDQ8IZQ8 938 aa14.33□□□□□ -0.12
UPF1-208ENST00000600012 BICD2Q8TD16 824 aa14.33□□□□□ -0.12
UPF1-208ENST00000600012 LEO1Q8WVC0 666 aaPredicted RBP14.33□□□□□ -0.12
UPF1-208ENST00000600012 ZFP91Q96JP5 570 aaPredicted RBP14.33□□□□□ -0.12
UPF1-208ENST00000600012 SPATA32Q96LK8 384 aa14.33□□□□□ -0.12
UPF1-208ENST00000600012 INPP4AQ96PE3 977 aaPredicted RBP14.33□□□□□ -0.12
UPF1-208ENST00000600012 LMBRD1Q9NUN5 540 aa14.33□□□□□ -0.12
UPF1-208ENST00000600012 NLRC5Q86WI3 1866 aa14.33□□□□□ -0.12
UPF1-208ENST00000600012 CCDC194A0A1B0GVG4 234 aa14.32□□□□□ -0.12
UPF1-208ENST00000600012 WNT7AO00755 349 aa14.32□□□□□ -0.12
UPF1-208ENST00000600012 CLK2P49760 499 aaKnown RBP14.32□□□□□ -0.12
UPF1-208ENST00000600012 HTRA4P83105 476 aaPredicted RBP14.32□□□□□ -0.12
UPF1-208ENST00000600012 TPRNQ4KMQ1 711 aa14.32□□□□□ -0.12
UPF1-208ENST00000600012 ATL3Q6DD88 541 aa14.32□□□□□ -0.12
UPF1-208ENST00000600012 METTL7BQ6UX53 244 aa14.32□□□□□ -0.12
UPF1-208ENST00000600012 KRT25Q7Z3Z0 450 aa14.32□□□□□ -0.12
UPF1-208ENST00000600012 TMEM87AQ8NBN3 555 aa14.32□□□□□ -0.12
UPF1-208ENST00000600012 FBXO22Q8NEZ5 403 aa14.32□□□□□ -0.12
UPF1-208ENST00000600012 SP7Q8TDD2 431 aaPredicted RBP14.32□□□□□ -0.12
UPF1-208ENST00000600012 UBE2ZQ9H832 354 aaPredicted RBP14.32□□□□□ -0.12
UPF1-208ENST00000600012 PSTPIP2Q9H939 334 aa14.32□□□□□ -0.12
UPF1-208ENST00000600012 CFAP45Q9UL16 551 aa14.32□□□□□ -0.12
UPF1-208ENST00000600012 NOL7Q9UMY1 257 aaKnown RBP14.32□□□□□ -0.12
UPF1-208ENST00000600012 COL4A6Q14031 1691 aa14.32□□□□□ -0.12
UPF1-208ENST00000600012 RALGAPA2Q2PPJ7 1873 aa14.31□□□□□ -0.12
UPF1-208ENST00000600012 TREHO43280 583 aa14.31□□□□□ -0.12
UPF1-208ENST00000600012 GADD45BO75293 160 aaPredicted RBP14.31□□□□□ -0.12
UPF1-208ENST00000600012 GNAT1P11488 350 aa14.31□□□□□ -0.12
UPF1-208ENST00000600012 MRPS9P82933 396 aaKnown RBP14.31□□□□□ -0.12
UPF1-208ENST00000600012 STK38Q15208 465 aa14.31□□□□□ -0.12
UPF1-208ENST00000600012 SF3A1Q15459 793 aaKnown RBP14.31□□□□□ -0.12
UPF1-208ENST00000600012 INF2Q27J81 1249 aa14.31□□□□□ -0.12
UPF1-208ENST00000600012 RILPL1Q5EBL4 403 aa14.31□□□□□ -0.12
UPF1-208ENST00000600012 TTC38Q5R3I4 469 aa14.31□□□□□ -0.12
UPF1-208ENST00000600012 USP17L6PQ6QN14 398 aa14.31□□□□□ -0.12
UPF1-208ENST00000600012 SEPT8Q92599 483 aa14.31□□□□□ -0.12
UPF1-208ENST00000600012 SAMD11Q96NU1 681 aa14.31□□□□□ -0.12
UPF1-208ENST00000600012 C17orf80Q9BSJ5 609 aa14.31□□□□□ -0.12
UPF1-208ENST00000600012 SCAND2PQ9GZW5 306 aaPredicted RBP14.31□□□□□ -0.12
UPF1-208ENST00000600012 RNPEPQ9H4A4 650 aa14.31□□□□□ -0.12
UPF1-208ENST00000600012 RTEL1Q9NZ71 1219 aa14.31□□□□□ -0.12
UPF1-208ENST00000600012 ZNF215Q9UL58 517 aaPredicted RBP14.31□□□□□ -0.12
UPF1-208ENST00000600012 PCDHB6Q9Y5E3 794 aa14.31□□□□□ -0.12
UPF1-208ENST00000600012 SPATA31C2B4DYI2 1134 aa14.3□□□□□ -0.12
UPF1-208ENST00000600012 MEIS2O14770 477 aa14.3□□□□□ -0.12
UPF1-208ENST00000600012 PLA2G5P39877 138 aa14.3□□□□□ -0.12
UPF1-208ENST00000600012 NASPP49321 788 aaPredicted RBP14.3□□□□□ -0.12
UPF1-208ENST00000600012 SEMA3FQ13275 785 aa14.3□□□□□ -0.12
UPF1-208ENST00000600012 NONOQ15233 471 aaKnown RBP eCLIP14.3□□□□□ -0.12
UPF1-208ENST00000600012 CSPP1Q1MSJ5 1256 aa14.3□□□□□ -0.12
UPF1-208ENST00000600012 XRRA1Q6P2D8 792 aa14.3□□□□□ -0.12
UPF1-208ENST00000600012 CYFIP1Q7L576 1253 aa14.3□□□□□ -0.12
UPF1-208ENST00000600012 GPR20Q99678 358 aa14.3□□□□□ -0.12
UPF1-208ENST00000600012 GLT8D2Q9H1C3 349 aa14.3□□□□□ -0.12
UPF1-208ENST00000600012 EPHX3Q9H6B9 360 aa14.3□□□□□ -0.12
UPF1-208ENST00000600012 BCAS3Q9H6U6 928 aa14.3□□□□□ -0.12
UPF1-208ENST00000600012 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms