RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 HAS1Q92839 578 aa18.23■□□□□ 0.51
TRIM28-213ENST00000598355 TNPO1Q92973 898 aaKnown RBP18.23■□□□□ 0.51
TRIM28-213ENST00000598355 C8orf76Q96K31 380 aa18.23■□□□□ 0.51
TRIM28-213ENST00000598355 FAM20AQ96MK3 541 aa18.23■□□□□ 0.51
TRIM28-213ENST00000598355 DISC1Q9NRI5 854 aa18.23■□□□□ 0.51
TRIM28-213ENST00000598355 VAV3Q9UKW4 847 aa18.23■□□□□ 0.51
TRIM28-213ENST00000598355 CHD7Q9P2D1 2997 aa18.23■□□□□ 0.51
TRIM28-213ENST00000598355 TMEM265A0A087WTH1 108 aa18.22■□□□□ 0.51
TRIM28-213ENST00000598355 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.22■□□□□ 0.51
TRIM28-213ENST00000598355 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.22■□□□□ 0.51
TRIM28-213ENST00000598355 WNT7AO00755 349 aa18.22■□□□□ 0.51
TRIM28-213ENST00000598355 BACH1O14867 736 aa18.22■□□□□ 0.51
TRIM28-213ENST00000598355 ZNF862O60290 1169 aa18.22■□□□□ 0.51
TRIM28-213ENST00000598355 RPLP2P05387 115 aaKnown RBP18.22■□□□□ 0.51
TRIM28-213ENST00000598355 THPOP40225 353 aa18.22■□□□□ 0.51
TRIM28-213ENST00000598355 MGAT3Q09327 533 aa18.22■□□□□ 0.51
TRIM28-213ENST00000598355 PPP2R5CQ13362 524 aa18.22■□□□□ 0.51
TRIM28-213ENST00000598355 POTEDQ86YR6 584 aa18.22■□□□□ 0.51
TRIM28-213ENST00000598355 BBXQ8WY36 941 aaPredicted RBP18.22■□□□□ 0.51
TRIM28-213ENST00000598355 FOXP1Q9H334 677 aaPredicted RBP18.22■□□□□ 0.51
TRIM28-213ENST00000598355 TRPC6Q9Y210 931 aa18.22■□□□□ 0.51
TRIM28-213ENST00000598355 MYO9BQ13459 2157 aa18.21■□□□□ 0.51
TRIM28-213ENST00000598355 RSPH10B2B2RC85 870 aa18.21■□□□□ 0.51
TRIM28-213ENST00000598355 CCNT1O60563 726 aaKnown RBP18.21■□□□□ 0.51
TRIM28-213ENST00000598355 RSPH10BP0C881 870 aa18.21■□□□□ 0.51
TRIM28-213ENST00000598355 FOSBP53539 338 aa18.21■□□□□ 0.51
TRIM28-213ENST00000598355 SPIRE1Q08AE8 756 aa18.21■□□□□ 0.51
TRIM28-213ENST00000598355 UGCGQ16739 394 aa18.21■□□□□ 0.51
TRIM28-213ENST00000598355 TCTN1Q2MV58 587 aa18.21■□□□□ 0.51
TRIM28-213ENST00000598355 CNKSR3Q6P9H4 555 aa18.21■□□□□ 0.51
TRIM28-213ENST00000598355 TRAPPC12Q8WVT3 735 aa18.21■□□□□ 0.51
TRIM28-213ENST00000598355 GABBR1Q9UBS5 961 aa18.21■□□□□ 0.51
TRIM28-213ENST00000598355 PCDHA2Q9Y5H9 948 aa18.21■□□□□ 0.51
TRIM28-213ENST00000598355 SMIM35A0A1B0GVV1 85 aa18.2■□□□□ 0.5
TRIM28-213ENST00000598355 ACTN1P12814 892 aa18.2■□□□□ 0.5
TRIM28-213ENST00000598355 GUCY1B3Q02153 619 aa18.2■□□□□ 0.5
TRIM28-213ENST00000598355 PLEKHG4Q58EX7 1191 aa18.2■□□□□ 0.5
TRIM28-213ENST00000598355 FAM167AQ96KS9 214 aa18.2■□□□□ 0.5
TRIM28-213ENST00000598355 OSBPL7Q9BZF2 842 aa18.2■□□□□ 0.5
TRIM28-213ENST00000598355 COL4A6Q14031 1691 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 C22orf31O95567 290 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 CHRNA1P02708 482 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 CTSHP09668 335 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 DNAJB2P25686 324 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 PRKCEQ02156 737 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 SAFBQ15424 915 aaKnown RBP eCLIP18.19■□□□□ 0.5
TRIM28-213ENST00000598355 ZNF484Q5JVG2 852 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 MTHFD1LQ6UB35 978 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 MIER3Q7Z3K6 550 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 FAM184AQ8NB25 1140 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 ZBTB10Q96DT7 871 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 SLC9A7Q96T83 725 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 PBX4Q9BYU1 374 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 SAMM50Q9Y512 469 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 SLC4A7Q9Y6M7 1214 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 COL6A3P12111 3177 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 KDM3AQ9Y4C1 1321 aa18.19■□□□□ 0.5
TRIM28-213ENST00000598355 TTC3P53804 2025 aa18.18■□□□□ 0.5
TRIM28-213ENST00000598355 EML1O00423 815 aa18.18■□□□□ 0.5
TRIM28-213ENST00000598355 CHMP2AO43633 222 aa18.18■□□□□ 0.5
TRIM28-213ENST00000598355 STBD1O95210 358 aa18.18■□□□□ 0.5
TRIM28-213ENST00000598355 OATP04181 439 aa18.18■□□□□ 0.5
TRIM28-213ENST00000598355 U2AF2P26368 475 aaKnown RBP eCLIP18.18■□□□□ 0.5
TRIM28-213ENST00000598355 WDR5P61964 334 aaKnown RBP18.18■□□□□ 0.5
TRIM28-213ENST00000598355 IGBP1P78318 339 aa18.18■□□□□ 0.5
TRIM28-213ENST00000598355 ORC2Q13416 577 aaPredicted RBP18.18■□□□□ 0.5
TRIM28-213ENST00000598355 CUL4AQ13619 759 aa18.18■□□□□ 0.5
TRIM28-213ENST00000598355 SLFN12Q8IYM2 578 aa18.18■□□□□ 0.5
TRIM28-213ENST00000598355 LINC01465Q8N7H1 131 aa18.18■□□□□ 0.5
TRIM28-213ENST00000598355 PHOSPHO2Q8TCD6 241 aa18.18■□□□□ 0.5
TRIM28-213ENST00000598355 DNAJB3Q8WWF6 145 aa18.18■□□□□ 0.5
TRIM28-213ENST00000598355 FTOQ9C0B1 505 aaKnown RBP eCLIP18.18■□□□□ 0.5
TRIM28-213ENST00000598355 ABHD14A-ACY1A0A1B0GW23 586 aa18.17■□□□□ 0.5
TRIM28-213ENST00000598355 GRXCR1A8MXD5 290 aa18.17■□□□□ 0.5
TRIM28-213ENST00000598355 KIF28PB7ZC32 967 aa18.17■□□□□ 0.5
TRIM28-213ENST00000598355 NEMFO60524 1076 aa18.17■□□□□ 0.5
TRIM28-213ENST00000598355 EFCAB14O75071 495 aa18.17■□□□□ 0.5
TRIM28-213ENST00000598355 KLRC1P26715 233 aa18.17■□□□□ 0.5
TRIM28-213ENST00000598355 MRPS6P82932 125 aaKnown RBP18.17■□□□□ 0.5
TRIM28-213ENST00000598355 TARBP2Q15633 366 aaKnown RBP18.17■□□□□ 0.5
TRIM28-213ENST00000598355 Q7L0L9 218 aa18.17■□□□□ 0.5
TRIM28-213ENST00000598355 RSPH3Q86UC2 560 aa18.17■□□□□ 0.5
TRIM28-213ENST00000598355 NOSTRINQ8IVI9 506 aa18.17■□□□□ 0.5
TRIM28-213ENST00000598355 MTMR9Q96QG7 549 aa18.17■□□□□ 0.5
TRIM28-213ENST00000598355 CEP89Q96ST8 783 aa18.17■□□□□ 0.5
TRIM28-213ENST00000598355 TTYH1Q9H313 450 aaPredicted RBP18.17■□□□□ 0.5
TRIM28-213ENST00000598355 MTMR10Q9NXD2 777 aa18.17■□□□□ 0.5
TRIM28-213ENST00000598355 CEP131Q9UPN4 1083 aa18.17■□□□□ 0.5
TRIM28-213ENST00000598355 KIF3AQ9Y496 699 aa18.17■□□□□ 0.5
TRIM28-213ENST00000598355 ZBBXA8MT70 800 aa18.16■□□□□ 0.5
TRIM28-213ENST00000598355 RBAK-RBAKDNI3L0D1 243 aa18.16■□□□□ 0.5
TRIM28-213ENST00000598355 ATP2A2P16615 1042 aaKnown RBP18.16■□□□□ 0.5
TRIM28-213ENST00000598355 RAB30Q15771 203 aa18.16■□□□□ 0.5
TRIM28-213ENST00000598355 ZNF697Q5TEC3 545 aa18.16■□□□□ 0.5
TRIM28-213ENST00000598355 NME8Q8N427 588 aa18.16■□□□□ 0.5
TRIM28-213ENST00000598355 DEFB123Q8N688 67 aa18.16■□□□□ 0.5
TRIM28-213ENST00000598355 DBF4BQ8NFT6 615 aa18.16■□□□□ 0.5
TRIM28-213ENST00000598355 CDY2AQ9Y6F7 541 aa18.16■□□□□ 0.5
TRIM28-213ENST00000598355 SQORQ9Y6N5 450 aa18.16■□□□□ 0.5
TRIM28-213ENST00000598355 PBX2P40425 430 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms