RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 CAND2O75155 1236 aa15.62■□□□□ 0.09
UPF1-205ENST00000598209 RSPH10BP0C881 870 aa15.62■□□□□ 0.09
UPF1-205ENST00000598209 GJB2P29033 226 aa15.62■□□□□ 0.09
UPF1-205ENST00000598209 GNL2Q13823 731 aaKnown RBP15.62■□□□□ 0.09
UPF1-205ENST00000598209 GPNMBQ14956 572 aa15.62■□□□□ 0.09
UPF1-205ENST00000598209 RASIP1Q5U651 963 aa15.62■□□□□ 0.09
UPF1-205ENST00000598209 TAF2Q6P1X5 1199 aa15.62■□□□□ 0.09
UPF1-205ENST00000598209 HAS1Q92839 578 aa15.62■□□□□ 0.09
UPF1-205ENST00000598209 ZBTB10Q96DT7 871 aa15.62■□□□□ 0.09
UPF1-205ENST00000598209 MTIF3Q9H2K0 278 aaKnown RBP15.62■□□□□ 0.09
UPF1-205ENST00000598209 SMC3Q9UQE7 1217 aa15.62■□□□□ 0.09
UPF1-205ENST00000598209 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.62■□□□□ 0.09
UPF1-205ENST00000598209 COL1A2P08123 1366 aa15.62■□□□□ 0.09
UPF1-205ENST00000598209 LAMA3Q16787 3333 aa15.61■□□□□ 0.09
UPF1-205ENST00000598209 BAG4O95429 457 aaKnown RBP15.61■□□□□ 0.09
UPF1-205ENST00000598209 CTSHP09668 335 aa15.61■□□□□ 0.09
UPF1-205ENST00000598209 ACTN1P12814 892 aa15.61■□□□□ 0.09
UPF1-205ENST00000598209 ATP2B1P20020 1258 aa15.61■□□□□ 0.09
UPF1-205ENST00000598209 PPP2R5CQ13362 524 aa15.61■□□□□ 0.09
UPF1-205ENST00000598209 MBTPS1Q14703 1052 aa15.61■□□□□ 0.09
UPF1-205ENST00000598209 UGCGQ16739 394 aa15.61■□□□□ 0.09
UPF1-205ENST00000598209 ZNF484Q5JVG2 852 aa15.61■□□□□ 0.09
UPF1-205ENST00000598209 TRMT1LQ7Z2T5 733 aaKnown RBP15.61■□□□□ 0.09
UPF1-205ENST00000598209 SLFN12Q8IYM2 578 aa15.61■□□□□ 0.09
UPF1-205ENST00000598209 BBXQ8WY36 941 aaPredicted RBP15.61■□□□□ 0.09
UPF1-205ENST00000598209 CXXC1Q9P0U4 656 aaPredicted RBP15.61■□□□□ 0.09
UPF1-205ENST00000598209 VAV3Q9UKW4 847 aa15.61■□□□□ 0.09
UPF1-205ENST00000598209 MICAL3Q7RTP6 2002 aa15.61■□□□□ 0.09
UPF1-205ENST00000598209 PTPRSQ13332 1948 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 ZBBXA8MT70 800 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 KIF28PB7ZC32 967 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 EML1O00423 815 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 ZNF862O60290 1169 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 NEMFO60524 1076 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 CXCL10P02778 98 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 CALCRLQ16602 461 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 MTHFD1LQ6UB35 978 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 RPAINQ86UA6 219 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 RSPH3Q86UC2 560 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 NOSTRINQ8IVI9 506 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 DNAJB3Q8WWF6 145 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 FAM167AQ96KS9 214 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 PCDHA2Q9Y5H9 948 aa15.6■□□□□ 0.09
UPF1-205ENST00000598209 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.59■□□□□ 0.09
UPF1-205ENST00000598209 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.59■□□□□ 0.09
UPF1-205ENST00000598209 ZBTB42B2RXF5 422 aa15.59■□□□□ 0.09
UPF1-205ENST00000598209 OATP04181 439 aa15.59■□□□□ 0.09
UPF1-205ENST00000598209 U2AF2P26368 475 aaKnown RBP eCLIP15.59■□□□□ 0.09
UPF1-205ENST00000598209 KLRC1P26715 233 aa15.59■□□□□ 0.09
UPF1-205ENST00000598209 MCM7P33993 719 aa15.59■□□□□ 0.09
UPF1-205ENST00000598209 SMAD3P84022 425 aaKnown RBP15.59■□□□□ 0.09
UPF1-205ENST00000598209 PRKCEQ02156 737 aa15.59■□□□□ 0.09
UPF1-205ENST00000598209 CUL4AQ13619 759 aa15.59■□□□□ 0.09
UPF1-205ENST00000598209 FAM26DQ5JW98 314 aa15.59■□□□□ 0.09
UPF1-205ENST00000598209 FAM109BQ6ICB4 259 aaPredicted RBP15.59■□□□□ 0.09
UPF1-205ENST00000598209 CNKSR3Q6P9H4 555 aa15.59■□□□□ 0.09
UPF1-205ENST00000598209 FAM49AQ9H0Q0 323 aaPredicted RBP15.59■□□□□ 0.09
UPF1-205ENST00000598209 SMIM35A0A1B0GVV1 85 aa15.58■□□□□ 0.08
UPF1-205ENST00000598209 RBAK-RBAKDNI3L0D1 243 aa15.58■□□□□ 0.08
UPF1-205ENST00000598209 CHRNA1P02708 482 aa15.58■□□□□ 0.08
UPF1-205ENST00000598209 RPLP2P05387 115 aaKnown RBP15.58■□□□□ 0.08
UPF1-205ENST00000598209 TTC38Q5R3I4 469 aa15.58■□□□□ 0.08
UPF1-205ENST00000598209 NCAPH2Q6IBW4 605 aa15.58■□□□□ 0.08
UPF1-205ENST00000598209 GPR153Q6NV75 609 aa15.58■□□□□ 0.08
UPF1-205ENST00000598209 BANK1Q8NDB2 785 aa15.58■□□□□ 0.08
UPF1-205ENST00000598209 TMEM60Q9H2L4 133 aa15.58■□□□□ 0.08
UPF1-205ENST00000598209 NRBP2Q9NSY0 501 aa15.58■□□□□ 0.08
UPF1-205ENST00000598209 NOL7Q9UMY1 257 aaKnown RBP15.58■□□□□ 0.08
UPF1-205ENST00000598209 CEP131Q9UPN4 1083 aa15.58■□□□□ 0.08
UPF1-205ENST00000598209 SLC4A7Q9Y6M7 1214 aa15.58■□□□□ 0.08
UPF1-205ENST00000598209 ARID2Q68CP9 1835 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 GRXCR1A8MXD5 290 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 H3BQV1 296 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 BAIAP3O94812 1187 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 C22orf31O95567 290 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 TXKP42681 527 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 TRAPPC10P48553 1259 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 PSMC5P62195 406 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 MRPS6P82932 125 aaKnown RBP15.57■□□□□ 0.08
UPF1-205ENST00000598209 SPIRE1Q08AE8 756 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 MGAT3Q09327 533 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 EPHA7Q15375 998 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 ZNF174Q15697 407 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 TCTN1Q2MV58 587 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 MCTP1Q6DN14 999 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 MTMR9Q96QG7 549 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 OSBPL7Q9BZF2 842 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 TTC12Q9H892 705 aaPredicted RBP15.57■□□□□ 0.08
UPF1-205ENST00000598209 SEPT9Q9UHD8 586 aaPredicted RBP15.57■□□□□ 0.08
UPF1-205ENST00000598209 PCDHA12Q9UN75 941 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 CDY2AQ9Y6F7 541 aa15.57■□□□□ 0.08
UPF1-205ENST00000598209 STBD1O95210 358 aa15.56■□□□□ 0.08
UPF1-205ENST00000598209 P4HBP07237 508 aaKnown RBP15.56■□□□□ 0.08
UPF1-205ENST00000598209 QARSP47897 775 aaKnown RBP15.56■□□□□ 0.08
UPF1-205ENST00000598209 TMEM62Q0P6H9 643 aa15.56■□□□□ 0.08
UPF1-205ENST00000598209 ORC2Q13416 577 aaPredicted RBP15.56■□□□□ 0.08
UPF1-205ENST00000598209 PLEKHG4Q58EX7 1191 aa15.56■□□□□ 0.08
UPF1-205ENST00000598209 XKR3Q5GH77 459 aa15.56■□□□□ 0.08
UPF1-205ENST00000598209 IER5Q5VY09 327 aa15.56■□□□□ 0.08
UPF1-205ENST00000598209 LARP1BQ659C4 914 aaKnown RBP15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms