RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 TTC1Q99614 292 aa6.89□□□□□ -1.31
SMAD4-208ENST00000589706 ZFYVE21Q9BQ24 234 aa6.89□□□□□ -1.31
SMAD4-208ENST00000589706 PHF20Q9BVI0 1012 aa6.89□□□□□ -1.31
SMAD4-208ENST00000589706 ASPSCR1Q9BZE9 553 aa6.89□□□□□ -1.31
SMAD4-208ENST00000589706 GPRC5CQ9NQ84 441 aa6.89□□□□□ -1.31
SMAD4-208ENST00000589706 GTF2IRD1Q9UHL9 959 aa6.89□□□□□ -1.31
SMAD4-208ENST00000589706 PCDHA8Q9Y5H6 950 aa6.89□□□□□ -1.31
SMAD4-208ENST00000589706 BACE2Q9Y5Z0 518 aa6.89□□□□□ -1.31
SMAD4-208ENST00000589706 CCDC88AQ3V6T2 1871 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 LTN1O94822 1766 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 C4AP0C0L4 1744 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 KTN1Q86UP2 1357 aaKnown RBP6.88□□□□□ -1.31
SMAD4-208ENST00000589706 MEFVO15553 781 aaPredicted RBP6.88□□□□□ -1.31
SMAD4-208ENST00000589706 RRP1P56182 461 aaKnown RBP6.88□□□□□ -1.31
SMAD4-208ENST00000589706 TNK2Q07912 1038 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 ITKQ08881 620 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 MTMR1Q13613 665 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 MBTPS1Q14703 1052 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 HSP90AB3PQ58FF7 597 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 TREML4Q6UXN2 200 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 BEND4Q6ZU67 534 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 C22orf34Q6ZV56 151 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 DDX53Q86TM3 631 aaKnown RBP6.88□□□□□ -1.31
SMAD4-208ENST00000589706 MTDHQ86UE4 582 aaKnown RBP6.88□□□□□ -1.31
SMAD4-208ENST00000589706 SPATS2Q86XZ4 545 aaKnown RBP6.88□□□□□ -1.31
SMAD4-208ENST00000589706 KIF18BQ86Y91 864 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 IFNL3Q8IZI9 196 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 DAGLBQ8NCG7 672 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 PIWIL2Q8TC59 973 aaKnown RBP6.88□□□□□ -1.31
SMAD4-208ENST00000589706 PI4K2BQ8TCG2 481 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 HEXIM2Q96MH2 286 aaKnown RBP6.88□□□□□ -1.31
SMAD4-208ENST00000589706 FCRL3Q96P31 734 aaPredicted RBP6.88□□□□□ -1.31
SMAD4-208ENST00000589706 SIN3AQ96ST3 1273 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 ORAI3Q9BRQ5 295 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 HDAC8Q9BY41 377 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 PANK2Q9BZ23 570 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.88□□□□□ -1.31
SMAD4-208ENST00000589706 SAMD15Q9P1V8 674 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 CGNQ9P2M7 1197 aaKnown RBP6.88□□□□□ -1.31
SMAD4-208ENST00000589706 NPFFR2Q9Y5X5 522 aa6.88□□□□□ -1.31
SMAD4-208ENST00000589706 PRR33A8MZF0 331 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 ZEB2O60315 1214 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 ZNF865P0CJ78 1059 aaPredicted RBP6.87□□□□□ -1.31
SMAD4-208ENST00000589706 GYS1P13807 737 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 BPIP17213 487 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 COL8A1P27658 744 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 SOX10P56693 466 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 GPR85P60893 370 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 ITPK1Q13572 414 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 TESK1Q15569 626 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 NFE2Q16621 373 aaPredicted RBP6.87□□□□□ -1.31
SMAD4-208ENST00000589706 ABHD17CQ6PCB6 329 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 OGFOD3Q6PK18 319 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 LDHDQ86WU2 507 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.87□□□□□ -1.31
SMAD4-208ENST00000589706 ZNF655Q8N720 491 aaPredicted RBP6.87□□□□□ -1.31
SMAD4-208ENST00000589706 IP6K1Q92551 441 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 GPR62Q9BZJ7 368 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 PUS7LQ9H0K6 701 aaKnown RBP6.87□□□□□ -1.31
SMAD4-208ENST00000589706 IFT22Q9H7X7 185 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 GPR27Q9NS67 375 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 TMEFF2Q9UIK5 374 aaPredicted RBP6.87□□□□□ -1.31
SMAD4-208ENST00000589706 NOL7Q9UMY1 257 aaKnown RBP6.87□□□□□ -1.31
SMAD4-208ENST00000589706 TIAM2Q8IVF5 1701 aa6.87□□□□□ -1.31
SMAD4-208ENST00000589706 IGF2BP3O00425 579 aaKnown RBP eCLIP6.86□□□□□ -1.31
SMAD4-208ENST00000589706 NEMP1O14524 444 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 DHX15O43143 795 aaKnown RBP6.86□□□□□ -1.31
SMAD4-208ENST00000589706 DDNO94850 711 aaPredicted RBP6.86□□□□□ -1.31
SMAD4-208ENST00000589706 IFNGR1P15260 489 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 BMP8BP34820 402 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 SEPHS1P49903 392 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 TMPRSS15P98073 1019 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 MCL1Q07820 350 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 E4F1Q66K89 784 aaPredicted RBP6.86□□□□□ -1.31
SMAD4-208ENST00000589706 CENPQQ7L2Z9 268 aaPredicted RBP6.86□□□□□ -1.31
SMAD4-208ENST00000589706 TXNRD3Q86VQ6 643 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 CLEC10AQ8IUN9 316 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 MFSD4AQ8N468 514 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 PDCL2Q8N4E4 241 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 MYRIPQ8NFW9 859 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.86□□□□□ -1.31
SMAD4-208ENST00000589706 PIGBQ92521 554 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 TSR2Q969E8 191 aaKnown RBP6.86□□□□□ -1.31
SMAD4-208ENST00000589706 GCC1Q96CN9 775 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 MTMR8Q96EF0 704 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 TCTN2Q96GX1 697 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 C8orf48Q96LL4 319 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 TBC1D32Q96NH3 1257 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 MYCBPQ99417 103 aaPredicted RBP6.86□□□□□ -1.31
SMAD4-208ENST00000589706 SLC12A9Q9BXP2 914 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 RBM28Q9NW13 759 aaKnown RBP6.86□□□□□ -1.31
SMAD4-208ENST00000589706 CAPN6Q9Y6Q1 641 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 MEGF6O75095 1541 aa6.86□□□□□ -1.31
SMAD4-208ENST00000589706 MAP2P11137 1827 aaKnown RBP6.85□□□□□ -1.31
SMAD4-208ENST00000589706 RAD50Q92878 1312 aa6.85□□□□□ -1.31
SMAD4-208ENST00000589706 FAM208AQ9UK61 1670 aaKnown RBP6.85□□□□□ -1.31
SMAD4-208ENST00000589706 ARVCFO00192 962 aa6.85□□□□□ -1.31
SMAD4-208ENST00000589706 CBX4O00257 560 aa6.85□□□□□ -1.31
SMAD4-208ENST00000589706 ARNTLO00327 626 aa6.85□□□□□ -1.31
SMAD4-208ENST00000589706 GLRX3O76003 335 aaKnown RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms