RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 INSRRP14616 1297 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 ITGB5P18084 799 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 FOXK2Q01167 660 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 TMEM62Q0P6H9 643 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 PAK2Q13177 524 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 AAMPQ13685 434 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 PLEKHM2Q8IWE5 1019 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 MICAL1Q8TDZ2 1067 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 NEK1Q96PY6 1258 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 CDCA3Q99618 268 aaPredicted RBP12.7□□□□□ -0.38
VPS4B-202ENST00000588059 IL25Q9H293 177 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 SMARCAD1Q9H4L7 1026 aa12.7□□□□□ -0.38
VPS4B-202ENST00000588059 RIF1Q5UIP0 2472 aaKnown RBP12.69□□□□□ -0.38
VPS4B-202ENST00000588059 KDM3AQ9Y4C1 1321 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 RRN3P2A6NIE6 340 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 M0QZ92 97 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 HIP1O00291 1037 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 FSCN2O14926 492 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 NUBP1P53384 320 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 ERVFC1P60507 584 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 KCNC3Q14003 757 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 ASCL5Q7RTU5 278 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 TRAPPC12Q8WVT3 735 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 CUL5Q93034 780 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 CDHR1Q96JP9 859 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 RIPOR3Q96MK2 946 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 PCYT2Q99447 389 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 CELF4Q9BZC1 486 aaKnown RBP12.69□□□□□ -0.38
VPS4B-202ENST00000588059 S1PR5Q9H228 398 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 RWDD1Q9H446 243 aaPredicted RBP12.69□□□□□ -0.38
VPS4B-202ENST00000588059 OSBPL3Q9H4L5 887 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 PKD2L1Q9P0L9 805 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 HCSTQ9UBK5 93 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 LRFN2Q9ULH4 789 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 PCDHB12Q9Y5F1 795 aa12.69□□□□□ -0.38
VPS4B-202ENST00000588059 IFIT3O14879 490 aaKnown RBP12.68□□□□□ -0.38
VPS4B-202ENST00000588059 GALR2O43603 387 aaPredicted RBP12.68□□□□□ -0.38
VPS4B-202ENST00000588059 MGEA5O60502 916 aa12.68□□□□□ -0.38
VPS4B-202ENST00000588059 FGF18O76093 207 aa12.68□□□□□ -0.38
VPS4B-202ENST00000588059 IBSPP21815 317 aaPredicted RBP12.68□□□□□ -0.38
VPS4B-202ENST00000588059 SP100P23497 879 aaPredicted RBP12.68□□□□□ -0.38
VPS4B-202ENST00000588059 SARSP49591 514 aaKnown RBP12.68□□□□□ -0.38
VPS4B-202ENST00000588059 TMEM266Q2M3C6 531 aa12.68□□□□□ -0.38
VPS4B-202ENST00000588059 ANKRD54Q6NXT1 300 aa12.68□□□□□ -0.38
VPS4B-202ENST00000588059 SYCE2Q6PIF2 218 aa12.68□□□□□ -0.38
VPS4B-202ENST00000588059 TMEM184AQ6ZMB5 413 aa12.68□□□□□ -0.38
VPS4B-202ENST00000588059 SPZ1Q9BXG8 430 aa12.68□□□□□ -0.38
VPS4B-202ENST00000588059 AAASQ9NRG9 546 aa12.68□□□□□ -0.38
VPS4B-202ENST00000588059 PCDHA2Q9Y5H9 948 aa12.68□□□□□ -0.38
VPS4B-202ENST00000588059 UBIAD1Q9Y5Z9 338 aa12.68□□□□□ -0.38
VPS4B-202ENST00000588059 EVPLQ92817 2033 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 ERICH2A1L162 156 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 PRR23AA6NEV1 266 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 TBKBP1A7MCY6 615 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 SRGAP2BP0DMP2 458 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 TECP42680 631 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 IRX6P78412 446 aaPredicted RBP12.67□□□□□ -0.38
VPS4B-202ENST00000588059 TRDNQ13061 729 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 MTMR1Q13613 665 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 WTAPQ15007 396 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 SPOUT1Q5T280 376 aaKnown RBP12.67□□□□□ -0.38
VPS4B-202ENST00000588059 PDE12Q6L8Q7 609 aaKnown RBP12.67□□□□□ -0.38
VPS4B-202ENST00000588059 B4GALNT3Q6L9W6 998 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 ZBTB33Q86T24 672 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 SMC5Q8IY18 1101 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 THNSL1Q8IYQ7 743 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 COLGALT1Q8NBJ5 622 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 KREMEN2Q8NCW0 462 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 RASGRP4Q8TDF6 673 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 APOL5Q9BWW9 433 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 ERVK-5Q9HDB9 667 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 TMEM260Q9NX78 707 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 TRPC6Q9Y210 931 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 PCDHB7Q9Y5E2 793 aa12.67□□□□□ -0.38
VPS4B-202ENST00000588059 DCHS1Q96JQ0 3298 aa12.66□□□□□ -0.38
VPS4B-202ENST00000588059 SMIM35A0A1B0GVV1 85 aa12.66□□□□□ -0.38
VPS4B-202ENST00000588059 NBL1P41271 181 aa12.66□□□□□ -0.38
VPS4B-202ENST00000588059 KRT76Q01546 638 aa12.66□□□□□ -0.38
VPS4B-202ENST00000588059 APOBRQ0VD83 1088 aa12.66□□□□□ -0.38
VPS4B-202ENST00000588059 NFX1Q12986 1120 aaKnown RBP12.66□□□□□ -0.38
VPS4B-202ENST00000588059 PLCB4Q15147 1175 aa12.66□□□□□ -0.38
VPS4B-202ENST00000588059 FAM102BQ5T8I3 360 aa12.66□□□□□ -0.38
VPS4B-202ENST00000588059 PLPP4Q5VZY2 271 aa12.66□□□□□ -0.38
VPS4B-202ENST00000588059 CATIPQ7Z7H3 387 aa12.66□□□□□ -0.38
VPS4B-202ENST00000588059 TMEM105Q8N8V8 129 aa12.66□□□□□ -0.38
VPS4B-202ENST00000588059 RRP36Q96EU6 259 aaKnown RBP12.66□□□□□ -0.38
VPS4B-202ENST00000588059 JPH1Q9HDC5 661 aaPredicted RBP12.66□□□□□ -0.38
VPS4B-202ENST00000588059 TYW1Q9NV66 732 aaKnown RBP12.66□□□□□ -0.38
VPS4B-202ENST00000588059 CDH22Q9UJ99 828 aa12.66□□□□□ -0.38
VPS4B-202ENST00000588059 LZTS1Q9Y250 596 aa12.66□□□□□ -0.38
VPS4B-202ENST00000588059 TAF6LQ9Y6J9 622 aa12.66□□□□□ -0.38
VPS4B-202ENST00000588059 VPS13AQ96RL7 3174 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 C9IYK1 514 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 BRD1O95696 1058 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 IGHDP01880 384 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 CYP21A2P08686 494 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 LAG3P18627 525 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 MTMR3Q13615 1198 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 UBE2SQ16763 222 aa12.65□□□□□ -0.38
VPS4B-202ENST00000588059 LLGL2Q6P1M3 1020 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms