RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 DEFB128Q7Z7B8 93 aa15.31■□□□□ 0.04
CIITA-210ENST00000575513 NME8Q8N427 588 aa15.31■□□□□ 0.04
CIITA-210ENST00000575513 HAS1Q92839 578 aa15.31■□□□□ 0.04
CIITA-210ENST00000575513 NRBP2Q9NSY0 501 aa15.31■□□□□ 0.04
CIITA-210ENST00000575513 GABBR1Q9UBS5 961 aa15.31■□□□□ 0.04
CIITA-210ENST00000575513 CEP131Q9UPN4 1083 aa15.31■□□□□ 0.04
CIITA-210ENST00000575513 IGSF9BQ9UPX0 1349 aa15.31■□□□□ 0.04
CIITA-210ENST00000575513 SMIM35A0A1B0GVV1 85 aa15.3■□□□□ 0.04
CIITA-210ENST00000575513 FAM205CA6NFA0 338 aa15.3■□□□□ 0.04
CIITA-210ENST00000575513 NBNO60934 754 aa15.3■□□□□ 0.04
CIITA-210ENST00000575513 EFCAB14O75071 495 aa15.3■□□□□ 0.04
CIITA-210ENST00000575513 U2AF2P26368 475 aaKnown RBP eCLIP15.3■□□□□ 0.04
CIITA-210ENST00000575513 TRAPPC10P48553 1259 aa15.3■□□□□ 0.04
CIITA-210ENST00000575513 CNKSR3Q6P9H4 555 aa15.3■□□□□ 0.04
CIITA-210ENST00000575513 OTOP2Q7RTS6 562 aa15.3■□□□□ 0.04
CIITA-210ENST00000575513 NOSTRINQ8IVI9 506 aa15.3■□□□□ 0.04
CIITA-210ENST00000575513 CKAP2LQ8IYA6 745 aa15.3■□□□□ 0.04
CIITA-210ENST00000575513 PHOSPHO2Q8TCD6 241 aa15.3■□□□□ 0.04
CIITA-210ENST00000575513 GJA10Q969M2 543 aa15.3■□□□□ 0.04
CIITA-210ENST00000575513 LRCH3Q96II8 777 aa15.3■□□□□ 0.04
CIITA-210ENST00000575513 FTOQ9C0B1 505 aaKnown RBP eCLIP15.3■□□□□ 0.04
CIITA-210ENST00000575513 VAV3Q9UKW4 847 aa15.3■□□□□ 0.04
CIITA-210ENST00000575513 ABHD14A-ACY1A0A1B0GW23 586 aa15.29■□□□□ 0.04
CIITA-210ENST00000575513 CHMP2AO43633 222 aa15.29■□□□□ 0.04
CIITA-210ENST00000575513 MARCH6O60337 910 aa15.29■□□□□ 0.04
CIITA-210ENST00000575513 DKC1O60832 514 aaKnown RBP eCLIP15.29■□□□□ 0.04
CIITA-210ENST00000575513 FOSBP53539 338 aa15.29■□□□□ 0.04
CIITA-210ENST00000575513 IGBP1P78318 339 aa15.29■□□□□ 0.04
CIITA-210ENST00000575513 GUCY1B3Q02153 619 aa15.29■□□□□ 0.04
CIITA-210ENST00000575513 CUL4AQ13619 759 aa15.29■□□□□ 0.04
CIITA-210ENST00000575513 MBTPS1Q14703 1052 aa15.29■□□□□ 0.04
CIITA-210ENST00000575513 MTHFD1LQ6UB35 978 aa15.29■□□□□ 0.04
CIITA-210ENST00000575513 POTEDQ86YR6 584 aa15.29■□□□□ 0.04
CIITA-210ENST00000575513 ZNF710Q8N1W2 664 aa15.29■□□□□ 0.04
CIITA-210ENST00000575513 CXXC1Q9P0U4 656 aaPredicted RBP15.29■□□□□ 0.04
CIITA-210ENST00000575513 SLC4A7Q9Y6M7 1214 aa15.29■□□□□ 0.04
CIITA-210ENST00000575513 SQORQ9Y6N5 450 aa15.29■□□□□ 0.04
CIITA-210ENST00000575513 SZT2Q5T011 3432 aa15.29■□□□□ 0.04
CIITA-210ENST00000575513 LAMA2P24043 3122 aaKnown RBP15.28■□□□□ 0.04
CIITA-210ENST00000575513 TMEM265A0A087WTH1 108 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 ZBTB42B2RXF5 422 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 MAGEB2O15479 319 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 ZNF862O60290 1169 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 NEMFO60524 1076 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 OATP04181 439 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 KLRC1P26715 233 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 GNL2Q13823 731 aaKnown RBP15.28■□□□□ 0.04
CIITA-210ENST00000575513 CALCRLQ16602 461 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 PLEKHG4Q58EX7 1191 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 IER5Q5VY09 327 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 RUFY4Q6ZNE9 571 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 DNAJB3Q8WWF6 145 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 SNX21Q969T3 373 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 MTMR9Q96QG7 549 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 NIFKQ9BYG3 293 aaKnown RBP15.28■□□□□ 0.04
CIITA-210ENST00000575513 PCDHA12Q9UN75 941 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 SMC3Q9UQE7 1217 aa15.28■□□□□ 0.04
CIITA-210ENST00000575513 SLC34A2O95436 690 aa15.27■□□□□ 0.04
CIITA-210ENST00000575513 CHRNA1P02708 482 aa15.27■□□□□ 0.04
CIITA-210ENST00000575513 P4HBP07237 508 aaKnown RBP15.27■□□□□ 0.04
CIITA-210ENST00000575513 GJB2P29033 226 aa15.27■□□□□ 0.04
CIITA-210ENST00000575513 PSMC5P62195 406 aa15.27■□□□□ 0.04
CIITA-210ENST00000575513 SPIRE1Q08AE8 756 aa15.27■□□□□ 0.04
CIITA-210ENST00000575513 MGAT3Q09327 533 aa15.27■□□□□ 0.04
CIITA-210ENST00000575513 IKBKEQ14164 716 aa15.27■□□□□ 0.04
CIITA-210ENST00000575513 EPHA7Q15375 998 aa15.27■□□□□ 0.04
CIITA-210ENST00000575513 XKR3Q5GH77 459 aa15.27■□□□□ 0.04
CIITA-210ENST00000575513 USP38Q8NB14 1042 aa15.27■□□□□ 0.04
CIITA-210ENST00000575513 APBB2Q92870 758 aa15.27■□□□□ 0.04
CIITA-210ENST00000575513 SLC9A7Q96T83 725 aa15.27■□□□□ 0.04
CIITA-210ENST00000575513 KDM3AQ9Y4C1 1321 aa15.26■□□□□ 0.03
CIITA-210ENST00000575513 TRIP12Q14669 1992 aaPredicted RBP15.26■□□□□ 0.03
CIITA-210ENST00000575513 ZBBXA8MT70 800 aa15.26■□□□□ 0.03
CIITA-210ENST00000575513 EML1O00423 815 aa15.26■□□□□ 0.03
CIITA-210ENST00000575513 C22orf31O95567 290 aa15.26■□□□□ 0.03
CIITA-210ENST00000575513 ATP2A2P16615 1042 aaKnown RBP15.26■□□□□ 0.03
CIITA-210ENST00000575513 QARSP47897 775 aaKnown RBP15.26■□□□□ 0.03
CIITA-210ENST00000575513 MRPS6P82932 125 aaKnown RBP15.26■□□□□ 0.03
CIITA-210ENST00000575513 PRKCEQ02156 737 aa15.26■□□□□ 0.03
CIITA-210ENST00000575513 RAB30Q15771 203 aa15.26■□□□□ 0.03
CIITA-210ENST00000575513 KIAA0319LQ8IZA0 1049 aa15.26■□□□□ 0.03
CIITA-210ENST00000575513 TRAPPC12Q8WVT3 735 aa15.26■□□□□ 0.03
CIITA-210ENST00000575513 SEPT8Q92599 483 aa15.26■□□□□ 0.03
CIITA-210ENST00000575513 INTS4Q96HW7 963 aaKnown RBP15.26■□□□□ 0.03
CIITA-210ENST00000575513 NOL7Q9UMY1 257 aaKnown RBP15.26■□□□□ 0.03
CIITA-210ENST00000575513 PPME1Q9Y570 386 aa15.26■□□□□ 0.03
CIITA-210ENST00000575513 KAT6AQ92794 2004 aa15.26■□□□□ 0.03
CIITA-210ENST00000575513 M0QZ92 97 aa15.25■□□□□ 0.03
CIITA-210ENST00000575513 STBD1O95210 358 aa15.25■□□□□ 0.03
CIITA-210ENST00000575513 CTSHP09668 335 aa15.25■□□□□ 0.03
CIITA-210ENST00000575513 TMOD1P28289 359 aa15.25■□□□□ 0.03
CIITA-210ENST00000575513 TARBP2Q15633 366 aaKnown RBP15.25■□□□□ 0.03
CIITA-210ENST00000575513 UGCGQ16739 394 aa15.25■□□□□ 0.03
CIITA-210ENST00000575513 C4orf19Q8IY42 314 aa15.25■□□□□ 0.03
CIITA-210ENST00000575513 EXOC8Q8IYI6 725 aa15.25■□□□□ 0.03
CIITA-210ENST00000575513 DBF4BQ8NFT6 615 aa15.25■□□□□ 0.03
CIITA-210ENST00000575513 FAM49AQ9H0Q0 323 aaPredicted RBP15.25■□□□□ 0.03
CIITA-210ENST00000575513 TTC12Q9H892 705 aaPredicted RBP15.25■□□□□ 0.03
CIITA-210ENST00000575513 MSRAQ9UJ68 235 aa15.25■□□□□ 0.03
CIITA-210ENST00000575513 TANC1Q9C0D5 1861 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms