RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 SP2Q02086 613 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 ARHGEF16Q5VV41 709 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 ZSCAN25Q6NSZ9 544 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 TRMT2AQ8IZ69 625 aaKnown RBP13.14□□□□□ -0.31
CDH3-208ENST00000569036 RHPN1Q8TCX5 695 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 FTHL17Q9BXU8 183 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 EPC1Q9H2F5 836 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 LRFN2Q9ULH4 789 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 ZMIZ1Q9ULJ6 1067 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 PCDHGA2Q9Y5H1 932 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 DOCK5Q9H7D0 1870 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 C2orf16Q68DN1 1984 aa13.14□□□□□ -0.31
CDH3-208ENST00000569036 SMG1Q96Q15 3661 aaKnown RBP13.14□□□□□ -0.31
CDH3-208ENST00000569036 LOC400499M0QZD8 3231 aa13.13□□□□□ -0.31
CDH3-208ENST00000569036 TBKBP1A7MCY6 615 aa13.13□□□□□ -0.31
CDH3-208ENST00000569036 CLASP2O75122 1294 aaKnown RBP13.13□□□□□ -0.31
CDH3-208ENST00000569036 IFIT2P09913 472 aaKnown RBP13.13□□□□□ -0.31
CDH3-208ENST00000569036 NOVP48745 357 aa13.13□□□□□ -0.31
CDH3-208ENST00000569036 PLCB3Q01970 1234 aa13.13□□□□□ -0.31
CDH3-208ENST00000569036 PHLDB3Q6NSJ2 640 aa13.13□□□□□ -0.31
CDH3-208ENST00000569036 TAF2Q6P1X5 1199 aa13.13□□□□□ -0.31
CDH3-208ENST00000569036 OTOP3Q7RTS5 596 aa13.13□□□□□ -0.31
CDH3-208ENST00000569036 TRIM50Q86XT4 487 aa13.13□□□□□ -0.31
CDH3-208ENST00000569036 CLASRPQ8N2M8 674 aaKnown RBP13.13□□□□□ -0.31
CDH3-208ENST00000569036 TMEM57Q8N5G2 664 aa13.13□□□□□ -0.31
CDH3-208ENST00000569036 MAF1Q9H063 256 aa13.13□□□□□ -0.31
CDH3-208ENST00000569036 PXMP2Q9NR77 195 aa13.13□□□□□ -0.31
CDH3-208ENST00000569036 PUF60Q9UHX1 559 aaKnown RBP13.13□□□□□ -0.31
CDH3-208ENST00000569036 CDY2AQ9Y6F7 541 aa13.13□□□□□ -0.31
CDH3-208ENST00000569036 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.13□□□□□ -0.31
CDH3-208ENST00000569036 TSPY2A6NKD2 308 aa13.12□□□□□ -0.31
CDH3-208ENST00000569036 ATP5JP18859 108 aa13.12□□□□□ -0.31
CDH3-208ENST00000569036 IBSPP21815 317 aaPredicted RBP13.12□□□□□ -0.31
CDH3-208ENST00000569036 KCNV1Q6PIU1 500 aa13.12□□□□□ -0.31
CDH3-208ENST00000569036 CCDC149Q6ZUS6 474 aa13.12□□□□□ -0.31
CDH3-208ENST00000569036 TMC7Q7Z402 723 aa13.12□□□□□ -0.31
CDH3-208ENST00000569036 ATRIPQ8WXE1 791 aa13.12□□□□□ -0.31
CDH3-208ENST00000569036 OSBP2Q969R2 916 aa13.12□□□□□ -0.31
CDH3-208ENST00000569036 GPR20Q99678 358 aa13.12□□□□□ -0.31
CDH3-208ENST00000569036 CWH43Q9H720 699 aa13.12□□□□□ -0.31
CDH3-208ENST00000569036 MLXIPQ9HAP2 919 aa13.12□□□□□ -0.31
CDH3-208ENST00000569036 TYW1Q9NV66 732 aaKnown RBP13.12□□□□□ -0.31
CDH3-208ENST00000569036 DZANK1Q9NVP4 752 aa13.12□□□□□ -0.31
CDH3-208ENST00000569036 IGSF9Q9P2J2 1179 aa13.12□□□□□ -0.31
CDH3-208ENST00000569036 FBXO4Q9UKT5 387 aa13.12□□□□□ -0.31
CDH3-208ENST00000569036 NRCAMQ92823 1304 aa13.12□□□□□ -0.31
CDH3-208ENST00000569036 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.11□□□□□ -0.31
CDH3-208ENST00000569036 C2orf71A6NGG8 1288 aa13.11□□□□□ -0.31
CDH3-208ENST00000569036 IPO8O15397 1037 aaKnown RBP13.11□□□□□ -0.31
CDH3-208ENST00000569036 LRRN2O75325 713 aa13.11□□□□□ -0.31
CDH3-208ENST00000569036 ZIC2O95409 532 aaPredicted RBP13.11□□□□□ -0.31
CDH3-208ENST00000569036 APPP05067 770 aa13.11□□□□□ -0.31
CDH3-208ENST00000569036 LAG3P18627 525 aa13.11□□□□□ -0.31
CDH3-208ENST00000569036 N4BP2L1Q5TBK1 243 aaPredicted RBP13.11□□□□□ -0.31
CDH3-208ENST00000569036 RSPH3Q86UC2 560 aa13.11□□□□□ -0.31
CDH3-208ENST00000569036 MRPL43Q8N983 215 aaKnown RBP13.11□□□□□ -0.31
CDH3-208ENST00000569036 ZBTB44Q8NCP5 570 aa13.11□□□□□ -0.31
CDH3-208ENST00000569036 PJA1Q8NG27 643 aa13.11□□□□□ -0.31
CDH3-208ENST00000569036 RSAD2Q8WXG1 361 aa13.11□□□□□ -0.31
CDH3-208ENST00000569036 GPKOWQ92917 476 aaPredicted RBP eCLIP13.11□□□□□ -0.31
CDH3-208ENST00000569036 USP26Q9BXU7 913 aa13.11□□□□□ -0.31
CDH3-208ENST00000569036 FOXQ1Q9C009 403 aa13.11□□□□□ -0.31
CDH3-208ENST00000569036 BCAS3Q9H6U6 928 aa13.11□□□□□ -0.31
CDH3-208ENST00000569036 GMEB2Q9UKD1 530 aa13.11□□□□□ -0.31
CDH3-208ENST00000569036 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.11□□□□□ -0.31
CDH3-208ENST00000569036 ITPR1Q14643 2758 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 MYH6P13533 1939 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 NOP56O00567 594 aaKnown RBP13.1□□□□□ -0.31
CDH3-208ENST00000569036 GPAA1O43292 621 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 LILRB5O75023 590 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 SLC3A2P08195 630 aaKnown RBP13.1□□□□□ -0.31
CDH3-208ENST00000569036 SARSP49591 514 aaKnown RBP13.1□□□□□ -0.31
CDH3-208ENST00000569036 MRPS6P82932 125 aaKnown RBP13.1□□□□□ -0.31
CDH3-208ENST00000569036 PPARAQ07869 468 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 SMC1AQ14683 1233 aaKnown RBP13.1□□□□□ -0.31
CDH3-208ENST00000569036 FAM102BQ5T8I3 360 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 CEP85Q6P2H3 762 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 TMC5Q6UXY8 1006 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 IFNL3Q8IZI9 196 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 DNAJB3Q8WWF6 145 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 TMX1Q9H3N1 280 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 ARHGEF3Q9NR81 526 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 ZNF215Q9UL58 517 aaPredicted RBP13.1□□□□□ -0.31
CDH3-208ENST00000569036 PADI3Q9ULW8 664 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 PCDHB7Q9Y5E2 793 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 ABCB11O95342 1321 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 BPTFQ12830 3046 aa13.1□□□□□ -0.31
CDH3-208ENST00000569036 HELZ2Q9BYK8 2649 aaKnown RBP13.09□□□□□ -0.31
CDH3-208ENST00000569036 DMXL2Q8TDJ6 3036 aa13.09□□□□□ -0.31
CDH3-208ENST00000569036 C1QTNF9BB2RNN3 333 aa13.09□□□□□ -0.31
CDH3-208ENST00000569036 LAMTOR5O43504 91 aa13.09□□□□□ -0.31
CDH3-208ENST00000569036 TBC1D4O60343 1298 aa13.09□□□□□ -0.31
CDH3-208ENST00000569036 C1QTNF9P0C862 333 aa13.09□□□□□ -0.31
CDH3-208ENST00000569036 PDHBP11177 359 aa13.09□□□□□ -0.31
CDH3-208ENST00000569036 SRFP11831 508 aa13.09□□□□□ -0.31
CDH3-208ENST00000569036 MYCLP12524 364 aaPredicted RBP13.09□□□□□ -0.31
CDH3-208ENST00000569036 EPCAMP16422 314 aa13.09□□□□□ -0.31
CDH3-208ENST00000569036 GNAT2P19087 354 aa13.09□□□□□ -0.31
CDH3-208ENST00000569036 CSTF1Q05048 431 aaKnown RBP13.09□□□□□ -0.31
CDH3-208ENST00000569036 ZNF543Q08ER8 600 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms