RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 C4orf19Q8IY42 314 aa24.65■■□□□ 1.54
CLN3-234ENST00000568472 ZNF396Q96N95 335 aaPredicted RBP24.65■■□□□ 1.54
CLN3-234ENST00000568472 CTAGE1Q96RT6 745 aa24.65■■□□□ 1.54
CLN3-234ENST00000568472 EIF2AK1Q9BQI3 630 aaKnown RBP24.65■■□□□ 1.54
CLN3-234ENST00000568472 NOC4LQ9BVI4 516 aaKnown RBP24.65■■□□□ 1.54
CLN3-234ENST00000568472 CAND2O75155 1236 aa24.64■■□□□ 1.54
CLN3-234ENST00000568472 CYP2C9P11712 490 aa24.64■■□□□ 1.54
CLN3-234ENST00000568472 RBL2Q08999 1139 aa24.64■■□□□ 1.54
CLN3-234ENST00000568472 SF3A1Q15459 793 aaKnown RBP24.64■■□□□ 1.54
CLN3-234ENST00000568472 ATL3Q6DD88 541 aa24.64■■□□□ 1.54
CLN3-234ENST00000568472 IGSF22Q8N9C0 903 aa24.64■■□□□ 1.54
CLN3-234ENST00000568472 RETREG2Q8NC44 543 aa24.64■■□□□ 1.54
CLN3-234ENST00000568472 NIFKQ9BYG3 293 aaKnown RBP24.64■■□□□ 1.54
CLN3-234ENST00000568472 LRWD1Q9UFC0 647 aa24.64■■□□□ 1.54
CLN3-234ENST00000568472 TUBE1Q9UJT0 475 aa24.64■■□□□ 1.54
CLN3-234ENST00000568472 TREHO43280 583 aa24.63■■□□□ 1.53
CLN3-234ENST00000568472 SLITRK3O94933 977 aa24.63■■□□□ 1.53
CLN3-234ENST00000568472 LYPLA2O95372 231 aa24.63■■□□□ 1.53
CLN3-234ENST00000568472 F13A1P00488 732 aa24.63■■□□□ 1.53
CLN3-234ENST00000568472 SYN1P17600 705 aa24.63■■□□□ 1.53
CLN3-234ENST00000568472 MUTP22033 750 aa24.63■■□□□ 1.53
CLN3-234ENST00000568472 ZNF200P98182 395 aaPredicted RBP24.63■■□□□ 1.53
CLN3-234ENST00000568472 HIC1Q14526 733 aa24.63■■□□□ 1.53
CLN3-234ENST00000568472 UGCGQ16739 394 aa24.63■■□□□ 1.53
CLN3-234ENST00000568472 HAUS3Q68CZ6 603 aa24.63■■□□□ 1.53
CLN3-234ENST00000568472 OTUD6AQ7L8S5 288 aa24.63■■□□□ 1.53
CLN3-234ENST00000568472 BANK1Q8NDB2 785 aa24.63■■□□□ 1.53
CLN3-234ENST00000568472 LXNQ9BS40 222 aa24.63■■□□□ 1.53
CLN3-234ENST00000568472 POLR3CQ9BUI4 534 aaPredicted RBP24.63■■□□□ 1.53
CLN3-234ENST00000568472 TUFT1Q9NNX1 390 aa24.63■■□□□ 1.53
CLN3-234ENST00000568472 PPME1Q9Y570 386 aa24.63■■□□□ 1.53
CLN3-234ENST00000568472 MORC2Q9Y6X9 1032 aaPredicted RBP24.63■■□□□ 1.53
CLN3-234ENST00000568472 POTEMA6NI47 508 aa24.62■■□□□ 1.53
CLN3-234ENST00000568472 MAGEB2O15479 319 aa24.62■■□□□ 1.53
CLN3-234ENST00000568472 PARNO95453 639 aaKnown RBP24.62■■□□□ 1.53
CLN3-234ENST00000568472 MARCH8Q5T0T0 291 aa24.62■■□□□ 1.53
CLN3-234ENST00000568472 MFSD5Q6N075 450 aa24.62■■□□□ 1.53
CLN3-234ENST00000568472 RPAINQ86UA6 219 aa24.62■■□□□ 1.53
CLN3-234ENST00000568472 RSPH3Q86UC2 560 aa24.62■■□□□ 1.53
CLN3-234ENST00000568472 TMEM199Q8N511 208 aa24.62■■□□□ 1.53
CLN3-234ENST00000568472 DYDC2Q96IM9 177 aa24.62■■□□□ 1.53
CLN3-234ENST00000568472 RGL1Q9NZL6 768 aa24.62■■□□□ 1.53
CLN3-234ENST00000568472 PCDHA2Q9Y5H9 948 aa24.62■■□□□ 1.53
CLN3-234ENST00000568472 ALPK3Q96L96 1907 aa24.62■■□□□ 1.53
CLN3-234ENST00000568472 BRD1O95696 1058 aa24.61■■□□□ 1.53
CLN3-234ENST00000568472 XRCC6P12956 609 aaKnown RBP eCLIP24.61■■□□□ 1.53
CLN3-234ENST00000568472 RPA1P27694 616 aa24.61■■□□□ 1.53
CLN3-234ENST00000568472 IGBP1P78318 339 aa24.61■■□□□ 1.53
CLN3-234ENST00000568472 PRPF38BQ5VTL8 546 aaKnown RBP24.61■■□□□ 1.53
CLN3-234ENST00000568472 TPH2Q8IWU9 490 aa24.61■■□□□ 1.53
CLN3-234ENST00000568472 EXOC8Q8IYI6 725 aa24.61■■□□□ 1.53
CLN3-234ENST00000568472 AK8Q96MA6 479 aa24.61■■□□□ 1.53
CLN3-234ENST00000568472 TNRC18O15417 2968 aaPredicted RBP24.6■■□□□ 1.53
CLN3-234ENST00000568472 DDX11L8A8MPP1 907 aa24.6■■□□□ 1.53
CLN3-234ENST00000568472 ZBTB42B2RXF5 422 aa24.6■■□□□ 1.53
CLN3-234ENST00000568472 STBD1O95210 358 aa24.6■■□□□ 1.53
CLN3-234ENST00000568472 KLRC1P26715 233 aa24.6■■□□□ 1.53
CLN3-234ENST00000568472 FAM173BQ6P4H8 233 aa24.6■■□□□ 1.53
CLN3-234ENST00000568472 MTHFD1LQ6UB35 978 aa24.6■■□□□ 1.53
CLN3-234ENST00000568472 ATP6V1DQ9Y5K8 247 aa24.6■■□□□ 1.53
CLN3-234ENST00000568472 CLIC4Q9Y696 253 aa24.6■■□□□ 1.53
CLN3-234ENST00000568472 SMIM35A0A1B0GVV1 85 aa24.59■■□□□ 1.53
CLN3-234ENST00000568472 RFC2P35250 354 aa24.59■■□□□ 1.53
CLN3-234ENST00000568472 CYP4A11Q02928 519 aa24.59■■□□□ 1.53
CLN3-234ENST00000568472 PKP1Q13835 747 aa24.59■■□□□ 1.53
CLN3-234ENST00000568472 CTTNQ14247 550 aaKnown RBP24.59■■□□□ 1.53
CLN3-234ENST00000568472 TARBP2Q15633 366 aaKnown RBP24.59■■□□□ 1.53
CLN3-234ENST00000568472 KRT79Q5XKE5 535 aa24.59■■□□□ 1.53
CLN3-234ENST00000568472 TRMT1LQ7Z2T5 733 aaKnown RBP24.59■■□□□ 1.53
CLN3-234ENST00000568472 NME8Q8N427 588 aa24.59■■□□□ 1.53
CLN3-234ENST00000568472 KCTD17Q8N5Z5 321 aa24.59■■□□□ 1.53
CLN3-234ENST00000568472 DHX38Q92620 1227 aaKnown RBP24.59■■□□□ 1.53
CLN3-234ENST00000568472 JPH2Q9BR39 696 aaPredicted RBP24.59■■□□□ 1.53
CLN3-234ENST00000568472 PPP1R12CQ9BZL4 782 aa24.59■■□□□ 1.53
CLN3-234ENST00000568472 ANKEF1Q9NU02 776 aa24.59■■□□□ 1.53
CLN3-234ENST00000568472 SEPT9Q9UHD8 586 aaPredicted RBP24.59■■□□□ 1.53
CLN3-234ENST00000568472 SLC26A4O43511 780 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 CKBP12277 381 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 SELPP16109 830 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 YWHABP31946 246 aaKnown RBP24.58■■□□□ 1.53
CLN3-234ENST00000568472 CYP2C18P33260 490 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 LONP1P36776 959 aaKnown RBP24.58■■□□□ 1.53
CLN3-234ENST00000568472 NASPP49321 788 aaPredicted RBP24.58■■□□□ 1.53
CLN3-234ENST00000568472 NUCB2P80303 420 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 SLC39A14Q15043 492 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 PTPAQ15257 358 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 IL17AQ16552 155 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 TRIM71Q2Q1W2 868 aaKnown RBP24.58■■□□□ 1.53
CLN3-234ENST00000568472 FOXD4L5Q5VV16 416 aaPredicted RBP24.58■■□□□ 1.53
CLN3-234ENST00000568472 ANO5Q75V66 913 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 CATSPER3Q86XQ3 398 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 ZNF710Q8N1W2 664 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 FOXD4L4Q8WXT5 416 aaPredicted RBP24.58■■□□□ 1.53
CLN3-234ENST00000568472 BADQ92934 168 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 NACC1Q96RE7 527 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 USP28Q96RU2 1077 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 CFAP45Q9UL16 551 aa24.58■■□□□ 1.53
CLN3-234ENST00000568472 VWA3AA6NCI4 1184 aa24.57■■□□□ 1.52
CLN3-234ENST00000568472 SPATA31C1P0DKV0 1188 aa24.57■■□□□ 1.52
CLN3-234ENST00000568472 ITGB8P26012 769 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms