RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 LINC00301Q8NCQ3 95 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 BANK1Q8NDB2 785 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 TOX2Q96NM4 488 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 PCYT2Q99447 389 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 EIF2AK1Q9BQI3 630 aaKnown RBP11.29□□□□□ -0.6
USP3-216ENST00000559873 POLR3CQ9BUI4 534 aaPredicted RBP11.29□□□□□ -0.6
USP3-216ENST00000559873 FTOQ9C0B1 505 aaKnown RBP eCLIP11.29□□□□□ -0.6
USP3-216ENST00000559873 NT5C3AQ9H0P0 336 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 PRKAG2Q9UGJ0 569 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 SEPT9Q9UHD8 586 aaPredicted RBP11.29□□□□□ -0.6
USP3-216ENST00000559873 GTF2IRD1Q9UHL9 959 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 ATP11BQ9Y2G3 1177 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 TELO2Q9Y4R8 837 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 PPME1Q9Y570 386 aa11.29□□□□□ -0.6
USP3-216ENST00000559873 RPA1P27694 616 aa11.28□□□□□ -0.6
USP3-216ENST00000559873 MARCKSP29966 332 aaPredicted RBP11.28□□□□□ -0.6
USP3-216ENST00000559873 CCT6AP40227 531 aaKnown RBP11.28□□□□□ -0.6
USP3-216ENST00000559873 ME1P48163 572 aa11.28□□□□□ -0.6
USP3-216ENST00000559873 TRIM60Q495X7 471 aa11.28□□□□□ -0.6
USP3-216ENST00000559873 ANKRD33Q7Z3H0 272 aa11.28□□□□□ -0.6
USP3-216ENST00000559873 TPH2Q8IWU9 490 aa11.28□□□□□ -0.6
USP3-216ENST00000559873 C4orf19Q8IY42 314 aa11.28□□□□□ -0.6
USP3-216ENST00000559873 EXOC8Q8IYI6 725 aa11.28□□□□□ -0.6
USP3-216ENST00000559873 CALML4Q96GE6 196 aa11.28□□□□□ -0.6
USP3-216ENST00000559873 DYDC2Q96IM9 177 aa11.28□□□□□ -0.6
USP3-216ENST00000559873 SPATA32Q96LK8 384 aa11.28□□□□□ -0.6
USP3-216ENST00000559873 JPH2Q9BR39 696 aaPredicted RBP11.28□□□□□ -0.6
USP3-216ENST00000559873 HDAC6Q9UBN7 1215 aa11.28□□□□□ -0.6
USP3-216ENST00000559873 FBXO2Q9UK22 296 aaPredicted RBP11.28□□□□□ -0.6
USP3-216ENST00000559873 SRPRBQ9Y5M8 271 aaKnown RBP11.28□□□□□ -0.6
USP3-216ENST00000559873 EVI5O60447 810 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 LYPLA2O95372 231 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 CLTBP09497 229 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 YWHABP31946 246 aaKnown RBP11.27□□□□□ -0.61
USP3-216ENST00000559873 CDK7P50613 346 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 CTTNQ14247 550 aaKnown RBP11.27□□□□□ -0.61
USP3-216ENST00000559873 GRIK4Q16099 956 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 PTGISQ16647 500 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 UGCGQ16739 394 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 LRRC26Q2I0M4 334 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 TAF2Q6P1X5 1199 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 FAM126BQ8IXS8 530 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 LMBR1Q8WVP7 490 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 NACC1Q96RE7 527 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 HSD17B14Q9BPX1 270 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 TFIP11Q9UBB9 837 aaKnown RBP11.27□□□□□ -0.61
USP3-216ENST00000559873 CCDC39Q9UFE4 941 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 TUBE1Q9UJT0 475 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 NR2E3Q9Y5X4 410 aa11.27□□□□□ -0.61
USP3-216ENST00000559873 MYH9P35579 1960 aaKnown RBP11.27□□□□□ -0.61
USP3-216ENST00000559873 DDX11L8A8MPP1 907 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 MAGEB2O15479 319 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 ZNF862O60290 1169 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 CUTAO60888 179 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 SLITRK3O94933 977 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 XRCC6P12956 609 aaKnown RBP eCLIP11.26□□□□□ -0.61
USP3-216ENST00000559873 INSRRP14616 1297 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 HOXC8P31273 242 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 RFC5P40937 340 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 IGBP1P78318 339 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 TLE2Q04725 743 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 TBC1D8BQ0IIM8 1120 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 BFSP2Q13515 415 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 ZRSR1Q15695 479 aaKnown RBP11.26□□□□□ -0.61
USP3-216ENST00000559873 TRMT1LQ7Z2T5 733 aaKnown RBP11.26□□□□□ -0.61
USP3-216ENST00000559873 RSPH3Q86UC2 560 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 CABP7Q86V35 215 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 CATSPER3Q86XQ3 398 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 ZNF579Q8NAF0 562 aaKnown RBP11.26□□□□□ -0.61
USP3-216ENST00000559873 RETREG2Q8NC44 543 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 CAGE1Q8TC20 777 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 DPF3Q92784 378 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 PYM1Q9BRP8 204 aaKnown RBP11.26□□□□□ -0.61
USP3-216ENST00000559873 RNPEPQ9H4A4 650 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 ANKEF1Q9NU02 776 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 RGL1Q9NZL6 768 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 GRIN2DO15399 1336 aa11.26□□□□□ -0.61
USP3-216ENST00000559873 GOLGA6L4A6NEF3 574 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 GAS2O43903 313 aaKnown RBP11.25□□□□□ -0.61
USP3-216ENST00000559873 B4GALT4O60513 344 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 CAND2O75155 1236 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 MED24O75448 989 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 TMOD1P28289 359 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 RGS19P49795 217 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 POLGP54098 1239 aaPredicted RBP11.25□□□□□ -0.61
USP3-216ENST00000559873 PTK7Q13308 1070 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 IL17AQ16552 155 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 MTERF2Q49AM1 385 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 XKR9Q5GH70 373 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 GDF6Q6KF10 455 aaPredicted RBP11.25□□□□□ -0.61
USP3-216ENST00000559873 POTEGQ6S5H5 508 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 LEO1Q8WVC0 666 aaPredicted RBP11.25□□□□□ -0.61
USP3-216ENST00000559873 SLC7A3Q8WY07 619 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 CEP170P1Q96L14 293 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 MAP7D2Q96T17 732 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 NIFKQ9BYG3 293 aaKnown RBP11.25□□□□□ -0.61
USP3-216ENST00000559873 CSRNP2Q9H175 543 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 PRDM5Q9NQX1 630 aaPredicted RBP11.25□□□□□ -0.61
USP3-216ENST00000559873 CYP26B1Q9NR63 512 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 TRMT13Q9NUP7 481 aaKnown RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms