RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ACTN1P12814 892 aa15.5■□□□□ 0.07
SHMT2-219ENST00000555563 IL27Q8NEV9 243 aa15.5■□□□□ 0.07
SHMT2-219ENST00000555563 KCNMB3Q9NPA1 279 aa15.5■□□□□ 0.07
SHMT2-219ENST00000555563 DISC1Q9NRI5 854 aa15.5■□□□□ 0.07
SHMT2-219ENST00000555563 GABBR1Q9UBS5 961 aa15.5■□□□□ 0.07
SHMT2-219ENST00000555563 GBF1Q92538 1859 aa15.49■□□□□ 0.07
SHMT2-219ENST00000555563 ATP4AP20648 1035 aa15.49■□□□□ 0.07
SHMT2-219ENST00000555563 SFNP31947 248 aa15.49■□□□□ 0.07
SHMT2-219ENST00000555563 JAK3P52333 1124 aa15.49■□□□□ 0.07
SHMT2-219ENST00000555563 TCTN1Q2MV58 587 aa15.49■□□□□ 0.07
SHMT2-219ENST00000555563 B3GNT9Q6UX72 402 aa15.49■□□□□ 0.07
SHMT2-219ENST00000555563 POTEDQ86YR6 584 aa15.49■□□□□ 0.07
SHMT2-219ENST00000555563 CKAP2LQ8IYA6 745 aa15.49■□□□□ 0.07
SHMT2-219ENST00000555563 FAM184AQ8NB25 1140 aa15.49■□□□□ 0.07
SHMT2-219ENST00000555563 TNPO1Q92973 898 aaKnown RBP15.49■□□□□ 0.07
SHMT2-219ENST00000555563 TMX3Q96JJ7 454 aa15.49■□□□□ 0.07
SHMT2-219ENST00000555563 NAP1L4Q99733 375 aaKnown RBP15.49■□□□□ 0.07
SHMT2-219ENST00000555563 MAFBQ9Y5Q3 323 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-219ENST00000555563 SLC4A7Q9Y6M7 1214 aa15.49■□□□□ 0.07
SHMT2-219ENST00000555563 MYH9P35579 1960 aaKnown RBP15.48■□□□□ 0.07
SHMT2-219ENST00000555563 ZBTB42B2RXF5 422 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 WNT7AO00755 349 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 ZNF862O60290 1169 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 HBP1O60381 514 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 DNAJB2P25686 324 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 PBX2P40425 430 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 MCM2P49736 904 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 SAFBQ15424 915 aaKnown RBP eCLIP15.48■□□□□ 0.07
SHMT2-219ENST00000555563 UGCGQ16739 394 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 FAM26DQ5JW98 314 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 CNKSR3Q6P9H4 555 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 RPAINQ86UA6 219 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 DNAJB3Q8WWF6 145 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 PBX4Q9BYU1 374 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 OSBPL7Q9BZF2 842 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 FAM49AQ9H0Q0 323 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-219ENST00000555563 VAV3Q9UKW4 847 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 PTPRSQ13332 1948 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 COL1A2P08123 1366 aa15.48■□□□□ 0.07
SHMT2-219ENST00000555563 BAIAP3O94812 1187 aa15.47■□□□□ 0.07
SHMT2-219ENST00000555563 CHRNA1P02708 482 aa15.47■□□□□ 0.07
SHMT2-219ENST00000555563 ATP2A2P16615 1042 aaKnown RBP15.47■□□□□ 0.07
SHMT2-219ENST00000555563 PRKCEQ02156 737 aa15.47■□□□□ 0.07
SHMT2-219ENST00000555563 MGAT3Q09327 533 aa15.47■□□□□ 0.07
SHMT2-219ENST00000555563 PPP2R5CQ13362 524 aa15.47■□□□□ 0.07
SHMT2-219ENST00000555563 ZNF697Q5TEC3 545 aa15.47■□□□□ 0.07
SHMT2-219ENST00000555563 MTHFD1LQ6UB35 978 aa15.47■□□□□ 0.07
SHMT2-219ENST00000555563 TRMT1LQ7Z2T5 733 aaKnown RBP15.47■□□□□ 0.07
SHMT2-219ENST00000555563 MIER3Q7Z3K6 550 aa15.47■□□□□ 0.07
SHMT2-219ENST00000555563 FBXO18Q8NFZ0 1043 aa15.47■□□□□ 0.07
SHMT2-219ENST00000555563 RDM1Q8NG50 284 aa15.47■□□□□ 0.07
SHMT2-219ENST00000555563 BBXQ8WY36 941 aaPredicted RBP15.47■□□□□ 0.07
SHMT2-219ENST00000555563 HAS1Q92839 578 aa15.47■□□□□ 0.07
SHMT2-219ENST00000555563 FAM20AQ96MK3 541 aa15.47■□□□□ 0.07
SHMT2-219ENST00000555563 PCDHA2Q9Y5H9 948 aa15.47■□□□□ 0.07
SHMT2-219ENST00000555563 TBX3O15119 743 aa15.46■□□□□ 0.07
SHMT2-219ENST00000555563 OATP04181 439 aa15.46■□□□□ 0.07
SHMT2-219ENST00000555563 WDR5P61964 334 aaKnown RBP15.46■□□□□ 0.07
SHMT2-219ENST00000555563 PLEKHG4Q58EX7 1191 aa15.46■□□□□ 0.07
SHMT2-219ENST00000555563 ZNF484Q5JVG2 852 aa15.46■□□□□ 0.07
SHMT2-219ENST00000555563 RSPH3Q86UC2 560 aa15.46■□□□□ 0.07
SHMT2-219ENST00000555563 FAM167AQ96KS9 214 aa15.46■□□□□ 0.07
SHMT2-219ENST00000555563 FAM161BQ96MY7 647 aa15.46■□□□□ 0.07
SHMT2-219ENST00000555563 SLC9A7Q96T83 725 aa15.46■□□□□ 0.07
SHMT2-219ENST00000555563 TTYH1Q9H313 450 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-219ENST00000555563 CDY2AQ9Y6F7 541 aa15.46■□□□□ 0.07
SHMT2-219ENST00000555563 EML1O00423 815 aa15.45■□□□□ 0.06
SHMT2-219ENST00000555563 NEMFO60524 1076 aa15.45■□□□□ 0.06
SHMT2-219ENST00000555563 C22orf31O95567 290 aa15.45■□□□□ 0.06
SHMT2-219ENST00000555563 RPLP2P05387 115 aaKnown RBP15.45■□□□□ 0.06
SHMT2-219ENST00000555563 KLRC1P26715 233 aa15.45■□□□□ 0.06
SHMT2-219ENST00000555563 KCNJ6P48051 423 aa15.45■□□□□ 0.06
SHMT2-219ENST00000555563 RABGGTBP53611 331 aa15.45■□□□□ 0.06
SHMT2-219ENST00000555563 MRPS6P82932 125 aaKnown RBP15.45■□□□□ 0.06
SHMT2-219ENST00000555563 DBF4BQ8NFT6 615 aa15.45■□□□□ 0.06
SHMT2-219ENST00000555563 TIFAQ96CG3 184 aa15.45■□□□□ 0.06
SHMT2-219ENST00000555563 FOXP1Q9H334 677 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-219ENST00000555563 YBX2Q9Y2T7 364 aaKnown RBP15.45■□□□□ 0.06
SHMT2-219ENST00000555563 MICAL3Q7RTP6 2002 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 TMEM265A0A087WTH1 108 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 SMIM35A0A1B0GVV1 85 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 ABHD14A-ACY1A0A1B0GW23 586 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 KIF28PB7ZC32 967 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 MARCH6O60337 910 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 GHRP10912 638 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 ATP2B1P20020 1258 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 DEFB103AP81534 67 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 SPIRE1Q08AE8 756 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 TMEM62Q0P6H9 643 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 MKRN4PQ13434 485 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-219ENST00000555563 IKBKEQ14164 716 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 RAB30Q15771 203 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 CALCRLQ16602 461 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 BANK1Q8NDB2 785 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 SEPT8Q92599 483 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 CEP131Q9UPN4 1083 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 KIF3AQ9Y496 699 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 TRPV2Q9Y5S1 764 aa15.44■□□□□ 0.06
SHMT2-219ENST00000555563 TMEM150BA6NC51 233 aa15.43■□□□□ 0.06
SHMT2-219ENST00000555563 MYOGP15173 224 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms