RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 ZFYVE21Q9BQ24 234 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 PHF20Q9BVI0 1012 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 SEC61A2Q9H9S3 476 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 BARX1Q9HBU1 254 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-209ENST00000552008 IFT57Q9NWB7 429 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 MAGEC2Q9UBF1 373 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-209ENST00000552008 GULP1Q9UBP9 304 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 FTSJ1Q9UET6 329 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 ZDHHC9Q9Y397 364 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 PCDHA2Q9Y5H9 948 aa3.13□□□□□ -1.91
LIMA1-209ENST00000552008 TIMM13Q9Y5L4 95 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-209ENST00000552008 B4E1Z4 1266 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 GSTA4O15217 222 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 PPP1R11O60927 126 aaPredicted RBP3.12□□□□□ -1.91
LIMA1-209ENST00000552008 CNOT4O95628 575 aaKnown RBP3.12□□□□□ -1.91
LIMA1-209ENST00000552008 NTRK1P04629 796 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 CPEP16870 476 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 COMTP21964 271 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 SOX5P35711 763 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 IGFALSP35858 605 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 MLLT6P55198 1093 aaPredicted RBP3.12□□□□□ -1.91
LIMA1-209ENST00000552008 GPR85P60893 370 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 RPL11P62913 178 aaKnown RBP3.12□□□□□ -1.91
LIMA1-209ENST00000552008 TUBA3CQ13748 450 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 SART3Q15020 963 aaKnown RBP3.12□□□□□ -1.91
LIMA1-209ENST00000552008 PTPROQ16827 1216 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 KIZQ2M2Z5 673 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 FAM47CQ5HY64 1035 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 SLC35F1Q5T1Q4 408 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 ACBD5Q5T8D3 534 aaPredicted RBP3.12□□□□□ -1.91
LIMA1-209ENST00000552008 FNDC7Q5VTL7 733 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 AGBL4Q5VU57 503 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 STYK1Q6J9G0 422 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 TUBA3EQ6PEY2 450 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 KCNT2Q6UVM3 1135 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 RSPO2Q6UXX9 243 aaPredicted RBP3.12□□□□□ -1.91
LIMA1-209ENST00000552008 BRAPQ7Z569 592 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 DDX53Q86TM3 631 aaKnown RBP3.12□□□□□ -1.91
LIMA1-209ENST00000552008 DCP2Q8IU60 420 aaKnown RBP3.12□□□□□ -1.91
LIMA1-209ENST00000552008 ANKRD13AQ8IZ07 590 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 NPLOC4Q8TAT6 608 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 FRS2Q8WU20 508 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 CHAC2Q8WUX2 184 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 ZSWIM3Q96MP5 696 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 PUS7Q96PZ0 661 aaKnown RBP3.12□□□□□ -1.91
LIMA1-209ENST00000552008 LMF1Q96S06 567 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 MMP19Q99542 508 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 SLC52A2Q9HAB3 445 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 GPR27Q9NS67 375 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 COA3Q9Y2R0 106 aaPredicted RBP3.12□□□□□ -1.91
LIMA1-209ENST00000552008 PCDHA9Q9Y5H5 950 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 PCDHA8Q9Y5H6 950 aa3.12□□□□□ -1.91
LIMA1-209ENST00000552008 FAM47E-STBD1D6RA91 191 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 PDE8AO60658 829 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 CRTAMO95727 393 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 ASLP04424 464 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 SRGAP2CP0DJJ0 459 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 STAT5AP42229 794 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 MASP1P48740 699 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 COL10A1Q03692 680 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 LSAMPQ13449 338 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 NTRK3Q16288 839 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 CFAP100Q494V2 611 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 CEP68Q76N32 757 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 LRRTM3Q86VH5 581 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 FAM126BQ8IXS8 530 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 PPM1KQ8N3J5 372 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 KREMEN2Q8NCW0 462 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 IL17DQ8TAD2 202 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.11□□□□□ -1.91
LIMA1-209ENST00000552008 SLC7A14Q8TBB6 771 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 ZCCHC14Q8WYQ9 949 aaKnown RBP3.11□□□□□ -1.91
LIMA1-209ENST00000552008 TRMT2BQ96GJ1 504 aaKnown RBP3.11□□□□□ -1.91
LIMA1-209ENST00000552008 C1orf159Q96HA4 380 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 TMEM169Q96HH4 297 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 CLUHP3Q96NS8 147 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 CLIC6Q96NY7 704 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 LRRC37BQ96QE4 947 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 PRRX2Q99811 253 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 AP5M1Q9H0R1 490 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 CABP5Q9NP86 173 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 NGRNQ9NPE2 291 aaKnown RBP3.11□□□□□ -1.91
LIMA1-209ENST00000552008 INTS7Q9NVH2 962 aaKnown RBP3.11□□□□□ -1.91
LIMA1-209ENST00000552008 CLDND1Q9NY35 253 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 MARCH2Q9P0N8 246 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 TMEFF2Q9UIK5 374 aaPredicted RBP3.11□□□□□ -1.91
LIMA1-209ENST00000552008 COL4A3BPQ9Y5P4 624 aa3.11□□□□□ -1.91
LIMA1-209ENST00000552008 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-209ENST00000552008 C7orf72A4D263 438 aa3.1□□□□□ -1.91
LIMA1-209ENST00000552008 KPNA6O60684 536 aa3.1□□□□□ -1.91
LIMA1-209ENST00000552008 CYP7B1O75881 506 aa3.1□□□□□ -1.91
LIMA1-209ENST00000552008 RASGRP1O95267 797 aa3.1□□□□□ -1.91
LIMA1-209ENST00000552008 FUCA1P04066 466 aa3.1□□□□□ -1.91
LIMA1-209ENST00000552008 SOD2P04179 222 aa3.1□□□□□ -1.91
LIMA1-209ENST00000552008 CAPNS1P04632 268 aa3.1□□□□□ -1.91
LIMA1-209ENST00000552008 C6orf222P0C671 652 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-209ENST00000552008 JMJD7P0C870 316 aa3.1□□□□□ -1.91
LIMA1-209ENST00000552008 GNAT1P11488 350 aa3.1□□□□□ -1.91
LIMA1-209ENST00000552008 LCP1P13796 627 aa3.1□□□□□ -1.91
LIMA1-209ENST00000552008 SDSP20132 328 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms