RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 RTN4RL1Q86UN2 441 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-205ENST00000550592 LMBR1Q8WVP7 490 aa6.58□□□□□ -1.36
LIMA1-205ENST00000550592 RTF1Q92541 710 aaKnown RBP6.58□□□□□ -1.36
LIMA1-205ENST00000550592 SMAD5Q99717 465 aaKnown RBP6.58□□□□□ -1.36
LIMA1-205ENST00000550592 THOC2Q8NI27 1593 aaKnown RBP6.57□□□□□ -1.36
LIMA1-205ENST00000550592 WASHC2AQ641Q2 1341 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 SHTN1A0MZ66 631 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 GOLGA8AA7E2F4 631 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 GOLGA8BA8MQT2 603 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 ASGR2P07307 311 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 JUNBP17275 347 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-205ENST00000550592 MOGSQ13724 837 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 CD276Q5ZPR3 534 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 PROSER1Q86XN7 944 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 CMIPQ8IY22 773 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 E2F7Q96AV8 911 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 FUBP3Q96I24 572 aaKnown RBP eCLIP6.57□□□□□ -1.36
LIMA1-205ENST00000550592 SLC13A1Q9BZW2 595 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 RNF38Q9H0F5 515 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 TCEAL9Q9UHQ7 104 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 MSRAQ9UJ68 235 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 PLA2G2DQ9UNK4 145 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 RIMBP3CA6NJZ7 1639 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 RIMBP3BA6NNM3 1639 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 RIMBP3Q9UFD9 1639 aa6.57□□□□□ -1.36
LIMA1-205ENST00000550592 LCHNA4D1U4 455 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 TRIM75PA6NK02 468 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 FZD9O00144 591 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 KDM1AO60341 852 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 PEX10O60683 326 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 CFBP00751 764 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 ENO2P09104 434 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-205ENST00000550592 TMEM253P0C7T8 217 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 NCAM1P13591 858 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 STAT5AP42229 794 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 GPR3P46089 330 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 RAB27AP51159 221 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 SCAND1P57086 179 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 NKX3-2P78367 333 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 KRT85P78386 507 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 ZNF200P98182 395 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-205ENST00000550592 CACNB2Q08289 660 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-205ENST00000550592 ABCB5Q2M3G0 1257 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 CILP2Q8IUL8 1156 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 PHYKPLQ8IUZ5 450 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 C1orf162Q8NEQ5 155 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-205ENST00000550592 FAM168AQ92567 244 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 FAXDC2Q96IV6 333 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 ACAP3Q96P50 834 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 ORAI2Q96SN7 254 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 NESP48681 1621 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 CARMIL2Q6F5E8 1435 aa6.56□□□□□ -1.36
LIMA1-205ENST00000550592 E2F8A0AVK6 867 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 PRAMEF22A3QJZ6 481 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 AKAP10O43572 662 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 MPIG6BO95866 241 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 MYBL2P10244 700 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 RBP3P10745 1247 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 PTGS1P23219 599 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 IARSP41252 1262 aaKnown RBP6.55□□□□□ -1.36
LIMA1-205ENST00000550592 SRSF3P84103 164 aaKnown RBP6.55□□□□□ -1.36
LIMA1-205ENST00000550592 PTPN21Q16825 1174 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 TTC38Q5R3I4 469 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 PRAMEF18Q5VWM3 479 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 ZNF605Q86T29 641 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 NBPF11Q86T75 865 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 ZBTB46Q86UZ6 589 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 ZC3H18Q86VM9 953 aaKnown RBP6.55□□□□□ -1.36
LIMA1-205ENST00000550592 FMNL3Q8IVF7 1028 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 FAM26EQ8N5C1 309 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 HIPK4Q8NE63 616 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 HOOK2Q96ED9 719 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 LIN37Q96GY3 246 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-205ENST00000550592 CAMKK2Q96RR4 588 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 FOXB1Q99853 325 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 SEMA4AQ9H3S1 761 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 ARHGAP28Q9P2N2 729 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 KCNG1Q9UIX4 513 aa6.55□□□□□ -1.36
LIMA1-205ENST00000550592 BAZ1AQ9NRL2 1556 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-205ENST00000550592 UBA6A0AVT1 1052 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-205ENST00000550592 ZNF839A8K0R7 811 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 NFIBO00712 420 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 THBS2P35442 1172 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 PFKPQ01813 784 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 ALDH6A1Q02252 535 aaKnown RBP6.54□□□□□ -1.36
LIMA1-205ENST00000550592 TARBP2Q15633 366 aaKnown RBP6.54□□□□□ -1.36
LIMA1-205ENST00000550592 FSCN1Q16658 493 aaKnown RBP6.54□□□□□ -1.36
LIMA1-205ENST00000550592 TIGD7Q6NT04 549 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-205ENST00000550592 PGM2L1Q6PCE3 622 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 MPZL3Q6UWV2 235 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 CD300LDQ6UXZ3 194 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 ESPNLQ6ZVH7 1005 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 LDHDQ86WU2 507 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 CXorf67Q86X51 503 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-205ENST00000550592 C7orf31Q8N865 590 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 IGDCC4Q8TDY8 1250 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 ERCC4Q92889 916 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-205ENST00000550592 DDX11Q96FC9 970 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 MAML3Q96JK9 1138 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 CNTD2Q9H8S5 307 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms