RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 BADQ92934 168 aa13.99□□□□□ -0.17
VPS33A-207ENST00000542790 GJA10Q969M2 543 aa13.99□□□□□ -0.17
VPS33A-207ENST00000542790 GDF15Q99988 308 aa13.99□□□□□ -0.17
VPS33A-207ENST00000542790 NOC4LQ9BVI4 516 aaKnown RBP13.99□□□□□ -0.17
VPS33A-207ENST00000542790 UNC45AQ9H3U1 944 aa13.99□□□□□ -0.17
VPS33A-207ENST00000542790 PCDHGA4Q9Y5G9 962 aa13.99□□□□□ -0.17
VPS33A-207ENST00000542790 KIAA1217Q5T5P2 1943 aa13.99□□□□□ -0.17
VPS33A-207ENST00000542790 RRN3P2A6NIE6 340 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 KIF28PB7ZC32 967 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 CHMP2AO43633 222 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 ITGB8P26012 769 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 HOXC8P31273 242 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 BMP8BP34820 402 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 PPFIA1Q13136 1202 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 PTK7Q13308 1070 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 CALCRLQ16602 461 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 PPP1R15BQ5SWA1 713 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 MFSD5Q6N075 450 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 PDXDC2PQ6P474 469 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 B3GNT9Q6UX72 402 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 MIER3Q7Z3K6 550 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 CCDC60Q8IWA6 550 aaPredicted RBP13.98□□□□□ -0.17
VPS33A-207ENST00000542790 TMEM199Q8N511 208 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 RETREG2Q8NC44 543 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 ATP6V0A1Q93050 837 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 PPP1R12CQ9BZL4 782 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 SETD4Q9NVD3 440 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 PCDH10Q9P2E7 1040 aa13.98□□□□□ -0.17
VPS33A-207ENST00000542790 MAFBQ9Y5Q3 323 aaPredicted RBP13.98□□□□□ -0.17
VPS33A-207ENST00000542790 MKI67P46013 3256 aaKnown RBP13.98□□□□□ -0.17
VPS33A-207ENST00000542790 HSP90AA1P07900 732 aaKnown RBP13.97□□□□□ -0.17
VPS33A-207ENST00000542790 CYP2C18P33260 490 aa13.97□□□□□ -0.17
VPS33A-207ENST00000542790 MCM7P33993 719 aa13.97□□□□□ -0.17
VPS33A-207ENST00000542790 ZNF200P98182 395 aaPredicted RBP13.97□□□□□ -0.17
VPS33A-207ENST00000542790 FPGSQ05932 587 aa13.97□□□□□ -0.17
VPS33A-207ENST00000542790 PPP2R5CQ13362 524 aa13.97□□□□□ -0.17
VPS33A-207ENST00000542790 PLCB4Q15147 1175 aa13.97□□□□□ -0.17
VPS33A-207ENST00000542790 ZNF174Q15697 407 aa13.97□□□□□ -0.17
VPS33A-207ENST00000542790 TTC38Q5R3I4 469 aa13.97□□□□□ -0.17
VPS33A-207ENST00000542790 CKAP2LQ8IYA6 745 aa13.97□□□□□ -0.17
VPS33A-207ENST00000542790 CAGE1Q8TC20 777 aa13.97□□□□□ -0.17
VPS33A-207ENST00000542790 ATP8B4Q8TF62 1192 aa13.97□□□□□ -0.17
VPS33A-207ENST00000542790 LMBR1Q8WVP7 490 aa13.97□□□□□ -0.17
VPS33A-207ENST00000542790 CTAGE1Q96RT6 745 aa13.97□□□□□ -0.17
VPS33A-207ENST00000542790 UBE2OQ9C0C9 1292 aaKnown RBP13.97□□□□□ -0.17
VPS33A-207ENST00000542790 GABBR1Q9UBS5 961 aa13.97□□□□□ -0.17
VPS33A-207ENST00000542790 PCDHA12Q9UN75 941 aa13.97□□□□□ -0.17
VPS33A-207ENST00000542790 WNT7AO00755 349 aa13.96□□□□□ -0.17
VPS33A-207ENST00000542790 HBP1O60381 514 aa13.96□□□□□ -0.17
VPS33A-207ENST00000542790 INSRRP14616 1297 aa13.96□□□□□ -0.17
VPS33A-207ENST00000542790 ADAM17P78536 824 aa13.96□□□□□ -0.17
VPS33A-207ENST00000542790 HIC1Q14526 733 aa13.96□□□□□ -0.17
VPS33A-207ENST00000542790 GRIK4Q16099 956 aa13.96□□□□□ -0.17
VPS33A-207ENST00000542790 RILPL1Q5EBL4 403 aa13.96□□□□□ -0.17
VPS33A-207ENST00000542790 SERINC5Q86VE9 423 aa13.96□□□□□ -0.17
VPS33A-207ENST00000542790 FAM167AQ96KS9 214 aa13.96□□□□□ -0.17
VPS33A-207ENST00000542790 MTMR9Q96QG7 549 aa13.96□□□□□ -0.17
VPS33A-207ENST00000542790 NRBP2Q9NSY0 501 aa13.96□□□□□ -0.17
VPS33A-207ENST00000542790 VAV3Q9UKW4 847 aa13.96□□□□□ -0.17
VPS33A-207ENST00000542790 VPS37CA5D8V6 355 aaPredicted RBP13.95□□□□□ -0.18
VPS33A-207ENST00000542790 TREHO43280 583 aa13.95□□□□□ -0.18
VPS33A-207ENST00000542790 NUDT7P0C024 238 aa13.95□□□□□ -0.18
VPS33A-207ENST00000542790 SYT1P21579 422 aa13.95□□□□□ -0.18
VPS33A-207ENST00000542790 TXKP42681 527 aa13.95□□□□□ -0.18
VPS33A-207ENST00000542790 CCL23P55773 120 aa13.95□□□□□ -0.18
VPS33A-207ENST00000542790 RBL2Q08999 1139 aa13.95□□□□□ -0.18
VPS33A-207ENST00000542790 PPIGQ13427 754 aaKnown RBP eCLIP13.95□□□□□ -0.18
VPS33A-207ENST00000542790 EPHA7Q15375 998 aa13.95□□□□□ -0.18
VPS33A-207ENST00000542790 ZNF484Q5JVG2 852 aa13.95□□□□□ -0.18
VPS33A-207ENST00000542790 TAF2Q6P1X5 1199 aa13.95□□□□□ -0.18
VPS33A-207ENST00000542790 PTCD2Q8WV60 388 aaKnown RBP13.95□□□□□ -0.18
VPS33A-207ENST00000542790 PRO3102Q9H379 93 aa13.95□□□□□ -0.18
VPS33A-207ENST00000542790 TTC12Q9H892 705 aaPredicted RBP13.95□□□□□ -0.18
VPS33A-207ENST00000542790 TUBE1Q9UJT0 475 aa13.95□□□□□ -0.18
VPS33A-207ENST00000542790 UMODL1Q5DID0 1318 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 IGSF9BQ9UPX0 1349 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 A0A1W2PPC1 479 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 MBLAC1A4D2B0 266 aaPredicted RBP13.94□□□□□ -0.18
VPS33A-207ENST00000542790 EML1O00423 815 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 DKC1O60832 514 aaKnown RBP eCLIP13.94□□□□□ -0.18
VPS33A-207ENST00000542790 CAND2O75155 1236 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 PARNO95453 639 aaKnown RBP13.94□□□□□ -0.18
VPS33A-207ENST00000542790 RPLP2P05387 115 aaKnown RBP13.94□□□□□ -0.18
VPS33A-207ENST00000542790 IQCF3P0C7M6 154 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 CKBP12277 381 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 PDIA4P13667 645 aaKnown RBP13.94□□□□□ -0.18
VPS33A-207ENST00000542790 CSF2RAP15509 400 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 SELPP16109 830 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 ATP4AP20648 1035 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 RFC2P35250 354 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 THPOP40225 353 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 TOB1P50616 345 aaPredicted RBP13.94□□□□□ -0.18
VPS33A-207ENST00000542790 IGBP1P78318 339 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 MARCH8Q5T0T0 291 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 NCAPH2Q6IBW4 605 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 BRAPQ7Z569 592 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 RPUSD2Q8IZ73 545 aaKnown RBP13.94□□□□□ -0.18
VPS33A-207ENST00000542790 DHX38Q92620 1227 aaKnown RBP13.94□□□□□ -0.18
VPS33A-207ENST00000542790 WNT8AQ9H1J5 351 aa13.94□□□□□ -0.18
VPS33A-207ENST00000542790 TMEM60Q9H2L4 133 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms