RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CALML4Q96GE6 196 aa19.62■□□□□ 0.73
CLSTN3-210ENST00000540931 CDK5RAP3Q96JB5 506 aa19.62■□□□□ 0.73
CLSTN3-210ENST00000540931 SPATA32Q96LK8 384 aa19.62■□□□□ 0.73
CLSTN3-210ENST00000540931 NACC1Q96RE7 527 aa19.62■□□□□ 0.73
CLSTN3-210ENST00000540931 CCDC39Q9UFE4 941 aa19.62■□□□□ 0.73
CLSTN3-210ENST00000540931 TRPC6Q9Y210 931 aa19.62■□□□□ 0.73
CLSTN3-210ENST00000540931 SCN10AQ9Y5Y9 1956 aa19.62■□□□□ 0.73
CLSTN3-210ENST00000540931 MYH15Q9Y2K3 1946 aa19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 C17orf102A2RUQ5 167 aa19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 CUTAO60888 179 aa19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 OATP04181 439 aa19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 NCLP19338 710 aaKnown RBP19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 CDK7P50613 346 aa19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 CEBPZQ03701 1054 aaKnown RBP19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 DNM1Q05193 864 aaKnown RBP19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 FAM173BQ6P4H8 233 aa19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 CCDC155Q8N6L0 562 aa19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 CCDC43Q96MW1 224 aaKnown RBP19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 LXNQ9BS40 222 aa19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 ANKEF1Q9NU02 776 aa19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 TFIP11Q9UBB9 837 aaKnown RBP19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 GTF2IRD1Q9UHL9 959 aa19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 NOD1Q9Y239 953 aa19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 MYH9P35579 1960 aaKnown RBP19.61■□□□□ 0.73
CLSTN3-210ENST00000540931 DOCK5Q9H7D0 1870 aa19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 POTEMA6NI47 508 aa19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 EML1O00423 815 aa19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 MAGEB2O15479 319 aa19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 GAS2O43903 313 aaKnown RBP19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 EVI5O60447 810 aa19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 SLITRK3O94933 977 aa19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 CCT6AP40227 531 aaKnown RBP19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 FAM47CQ5HY64 1035 aa19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 TPH2Q8IWU9 490 aa19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 SNX29Q8TEQ0 813 aa19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 GJA10Q969M2 543 aa19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 UIMC1Q96RL1 719 aa19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 PCYT2Q99447 389 aa19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 NIFKQ9BYG3 293 aaKnown RBP19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 LAMA3Q16787 3333 aa19.6■□□□□ 0.73
CLSTN3-210ENST00000540931 SOX1O00570 391 aaPredicted RBP19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 CAND2O75155 1236 aa19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 SMIM10L2AP0DMW4 78 aa19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 SMIM10L2BP0DMW5 78 aa19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 PTGS1P23219 599 aa19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 ME1P48163 572 aa19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 CDC42EP1Q00587 391 aa19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 PRKCEQ02156 737 aa19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 PPFIA1Q13136 1202 aa19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 PLCB4Q15147 1175 aa19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 TAF2Q6P1X5 1199 aa19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 FAM43BQ6ZT52 329 aaPredicted RBP19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 RSPH3Q86UC2 560 aa19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 RETREG2Q8NC44 543 aa19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 DIS3LQ8TF46 1054 aaKnown RBP19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 CCSER1Q9C0I3 900 aa19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 PRKAG2Q9UGJ0 569 aa19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 FBXO2Q9UK22 296 aaPredicted RBP19.59■□□□□ 0.73
CLSTN3-210ENST00000540931 TMOD1P28289 359 aa19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 MARCKSP29966 332 aaPredicted RBP19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 HOXC8P31273 242 aa19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 YWHABP31946 246 aaKnown RBP19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 IRX5P78411 483 aaPredicted RBP19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 HYIQ5T013 277 aa19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 TRIM50Q86XT4 487 aa19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 BANK1Q8NDB2 785 aa19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 SLC17A8Q8NDX2 589 aa19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 RASSF8Q8NHQ8 419 aa19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 DYDC2Q96IM9 177 aa19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 RNPEPQ9H4A4 650 aa19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 FAM13BQ9NYF5 915 aa19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 HDAC6Q9UBN7 1215 aa19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 DBR1Q9UK59 544 aaKnown RBP19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 DNM3Q9UQ16 869 aa19.58■□□□□ 0.72
CLSTN3-210ENST00000540931 DDX11L8A8MPP1 907 aa19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 DLL1O00548 723 aa19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 PARNO95453 639 aaKnown RBP19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 MARK3P27448 753 aa19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 RFC5P40937 340 aa19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 RTP1P59025 263 aa19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 CHMP4BP1P59074 171 aa19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 PSMC6P62333 389 aa19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 PTK7Q13308 1070 aa19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 BFSP2Q13515 415 aa19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 GRIK4Q16099 956 aa19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 ADALQ6DHV7 355 aa19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 CABP7Q86V35 215 aa19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 CATSPER3Q86XQ3 398 aa19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 CAGE1Q8TC20 777 aa19.57■□□□□ 0.72
CLSTN3-210ENST00000540931 KAT6AQ92794 2004 aa19.56■□□□□ 0.72
CLSTN3-210ENST00000540931 GOLGA6L4A6NEF3 574 aa19.56■□□□□ 0.72
CLSTN3-210ENST00000540931 INSRRP14616 1297 aa19.56■□□□□ 0.72
CLSTN3-210ENST00000540931 DNM2P50570 870 aa19.56■□□□□ 0.72
CLSTN3-210ENST00000540931 ATN1P54259 1190 aaPredicted RBP19.56■□□□□ 0.72
CLSTN3-210ENST00000540931 CYP4A11Q02928 519 aa19.56■□□□□ 0.72
CLSTN3-210ENST00000540931 PTGISQ16647 500 aa19.56■□□□□ 0.72
CLSTN3-210ENST00000540931 FOXD4L6Q3SYB3 417 aaPredicted RBP19.56■□□□□ 0.72
CLSTN3-210ENST00000540931 FOXD4L3Q6VB84 417 aaPredicted RBP19.56■□□□□ 0.72
CLSTN3-210ENST00000540931 CCDC73Q6ZRK6 1079 aa19.56■□□□□ 0.72
CLSTN3-210ENST00000540931 FAM126BQ8IXS8 530 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms