RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 CERKLQ49MI3 558 aaPredicted RBP13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 TSG101Q99816 390 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 NCAPGQ9BPX3 1015 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 ZHX3Q9H4I2 956 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 LRRC4CQ9HCJ2 640 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 HYOU1Q9Y4L1 999 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 USP11P51784 963 aa13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 USH1GQ495M9 461 aa13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 CCDC40Q4G0X9 1142 aa13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 PRR16Q569H4 304 aa13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 KLHDC7AQ5VTJ3 777 aa13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 DPY19L2P1Q6NXN4 242 aa13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 FOXR2Q6PJQ5 311 aa13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 ADAT2Q7Z6V5 191 aaKnown RBP13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 CEP57Q86XR8 500 aa13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 CASKIN2Q8WXE0 1202 aa13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 IQCDQ96DY2 449 aa13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 LSM14BQ9BX40 385 aaKnown RBP13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 LRRC27Q9C0I9 530 aa13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 EMILIN3Q9NT22 766 aa13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 COL11A2P13942 1736 aaPredicted RBP13.77□□□□□ -0.2
SFSWAP-208ENST00000539506 SCN9AQ15858 1988 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 GOLGA8KD6RF30 607 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 PJA2O43164 708 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 EPHB4P54760 987 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 POLR2FP61218 127 aaKnown RBP13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 ARHGAP4P98171 946 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 IQCEQ6IPM2 695 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 MMGT1Q8N4V1 131 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 MYCBPQ99417 103 aaPredicted RBP13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 SH3GL2Q99962 352 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 NT5C3AQ9H0P0 336 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 ADAMTS1Q9UHI8 967 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 TRPC5Q9UL62 973 aaPredicted RBP13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 ODF2Q5BJF6 829 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 NAA35Q5VZE5 725 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 TATDN1Q6P1N9 297 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 CCDC17Q96LX7 622 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 ALS2CR12Q96Q35 445 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 DHX36Q9H2U1 1008 aaKnown RBP13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 NYAP2Q9P242 653 aa13.77□□□□□ -0.21
SFSWAP-208ENST00000539506 F5H6K3 240 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 RBAK-RBAKDNI3L0D1 243 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 KLRC1P26715 233 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 MARSP56192 900 aaKnown RBP13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 KLRC3Q07444 240 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 SF3B2Q13435 895 aaKnown RBP13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 GIT2Q14161 759 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 E2F5Q15329 346 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 ZC3H3Q8IXZ2 948 aaKnown RBP13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 TBC1D5Q92609 795 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 RPGRIP1Q96KN7 1286 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 CEP72Q9P209 647 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 SMCHD1A6NHR9 2005 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 KDM3AQ9Y4C1 1321 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 ACTN1P12814 892 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 NR1D1P20393 614 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 HOXA13P31271 388 aaPredicted RBP13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 MAP2K2P36507 400 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 PABPC4Q13310 644 aaKnown RBP eCLIP13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 ADAM9Q13443 819 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 DACT2Q5SW24 774 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 ZNF572Q7Z3I7 529 aaPredicted RBP13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 CCT8L2Q96SF2 557 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 IKZF4Q9H2S9 585 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 PLAAQ9Y263 795 aa13.76□□□□□ -0.21
SFSWAP-208ENST00000539506 SMIM23A6NLE4 172 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 RSPH10B2B2RC85 870 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 RSPH10BP0C881 870 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 PDE6BP35913 854 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 RBM5P52756 815 aaKnown RBP eCLIP13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 RAPGEF1Q13905 1077 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 CCDC65Q8IXS2 484 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 ZNF473Q8WTR7 871 aaKnown RBP13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 DCAF4Q8WV16 495 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 CEP63Q96MT8 703 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 QTRT2Q9H974 415 aaKnown RBP13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 PI4KBQ9UBF8 816 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 UTRNP46939 3433 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 SSU72P8A0A1W2PR75 194 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 A0A1W2PRG0 241 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 DCDC2CA8MYV0 355 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 G3V3G9 751 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 RAD51CO43502 376 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 NDUFB10O96000 172 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 FLT3P36888 993 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 ICA1Q05084 483 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 KCNA1Q09470 495 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 DCAF8Q5TAQ9 597 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 MSL1Q68DK7 614 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 PIK3R5Q8WYR1 880 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 SCLT1Q96NL6 688 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 REEP2Q9BRK0 252 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 IDI2Q9BXS1 227 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 GANQ9H2C0 597 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 BMP2KQ9NSY1 1161 aaPredicted RBP13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 ZNF219Q9P2Y4 722 aaPredicted RBP13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 A0A087X0T9 212 aa13.75□□□□□ -0.21
SFSWAP-208ENST00000539506 MMP10P09238 476 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms