RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 CYP4A11Q02928 519 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 CTTNQ14247 550 aaKnown RBP13.54□□□□□ -0.24
CHD4-203ENST00000535717 PDIA5Q14554 519 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 GRIK4Q16099 956 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 MARCH8Q5T0T0 291 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 ARL6IP4Q66PJ3 421 aaKnown RBP13.54□□□□□ -0.24
CHD4-203ENST00000535717 TRMT1LQ7Z2T5 733 aaKnown RBP13.54□□□□□ -0.24
CHD4-203ENST00000535717 IGSF22Q8N9C0 903 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 TRIM43Q96BQ3 446 aaPredicted RBP13.54□□□□□ -0.24
CHD4-203ENST00000535717 ZNF396Q96N95 335 aaPredicted RBP13.54□□□□□ -0.24
CHD4-203ENST00000535717 LXNQ9BS40 222 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 TMEM39AQ9NV64 488 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 PCDH10Q9P2E7 1040 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 LRWD1Q9UFC0 647 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 TBX21Q9UL17 535 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 NRCAMQ92823 1304 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 MYH15Q9Y2K3 1946 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 TRIP12Q14669 1992 aaPredicted RBP13.54□□□□□ -0.24
CHD4-203ENST00000535717 VWA3AA6NCI4 1184 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 ZBTB42B2RXF5 422 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 KIAA0355O15063 1070 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 TREHO43280 583 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 HBP1O60381 514 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 SPATA31C1P0DKV0 1188 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 GNAT1P11488 350 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 NASPP49321 788 aaPredicted RBP13.53□□□□□ -0.24
CHD4-203ENST00000535717 IGBP1P78318 339 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 SLC39A14Q15043 492 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 XKR3Q5GH77 459 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 TPH2Q8IWU9 490 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 TRAPPC12Q8WVT3 735 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 BBXQ8WY36 941 aaPredicted RBP13.53□□□□□ -0.24
CHD4-203ENST00000535717 TNPO1Q92973 898 aaKnown RBP13.53□□□□□ -0.24
CHD4-203ENST00000535717 ZBTB10Q96DT7 871 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 FAM167AQ96KS9 214 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 ZSWIM4Q9H7M6 989 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 PRDM5Q9NQX1 630 aaPredicted RBP13.53□□□□□ -0.24
CHD4-203ENST00000535717 NRBP2Q9NSY0 501 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 ZMYND8Q9ULU4 1186 aaPredicted RBP13.53□□□□□ -0.24
CHD4-203ENST00000535717 NOD1Q9Y239 953 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 NR2E3Q9Y5X4 410 aa13.53□□□□□ -0.24
CHD4-203ENST00000535717 MBLAC1A4D2B0 266 aaPredicted RBP13.52□□□□□ -0.25
CHD4-203ENST00000535717 TMEM150BA6NC51 233 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 RRN3P2A6NIE6 340 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 DDX11L8A8MPP1 907 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 PP2D1A8MPX8 630 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 MED24O75448 989 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 SYN1P17600 705 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 MARCKSP29966 332 aaPredicted RBP13.52□□□□□ -0.25
CHD4-203ENST00000535717 CDC25AP30304 524 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 DNM1Q05193 864 aaKnown RBP13.52□□□□□ -0.25
CHD4-203ENST00000535717 GRIN1Q05586 938 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 PTK7Q13308 1070 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 ZNF484Q5JVG2 852 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 ANO5Q75V66 913 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 SERINC5Q86VE9 423 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 CATSPER3Q86XQ3 398 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 C4orf19Q8IY42 314 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 ERMNQ8TAM6 284 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 NEK9Q8TD19 979 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 DHX38Q92620 1227 aaKnown RBP13.52□□□□□ -0.25
CHD4-203ENST00000535717 WNT8BQ93098 351 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 POLR3CQ9BUI4 534 aaPredicted RBP13.52□□□□□ -0.25
CHD4-203ENST00000535717 NOC4LQ9BVI4 516 aaKnown RBP13.52□□□□□ -0.25
CHD4-203ENST00000535717 NIFKQ9BYG3 293 aaKnown RBP13.52□□□□□ -0.25
CHD4-203ENST00000535717 RAB34Q9BZG1 259 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 TUFT1Q9NNX1 390 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 KAT6AQ92794 2004 aa13.52□□□□□ -0.25
CHD4-203ENST00000535717 COL1A2P08123 1366 aa13.51□□□□□ -0.25
CHD4-203ENST00000535717 H0YGN5 161 aa13.51□□□□□ -0.25
CHD4-203ENST00000535717 ZBTB39O15060 712 aa13.51□□□□□ -0.25
CHD4-203ENST00000535717 DKC1O60832 514 aaKnown RBP eCLIP13.51□□□□□ -0.25
CHD4-203ENST00000535717 LYPLA2O95372 231 aa13.51□□□□□ -0.25
CHD4-203ENST00000535717 ITGB8P26012 769 aa13.51□□□□□ -0.25
CHD4-203ENST00000535717 RPA1P27694 616 aa13.51□□□□□ -0.25
CHD4-203ENST00000535717 NUCB2P80303 420 aa13.51□□□□□ -0.25
CHD4-203ENST00000535717 TARBP2Q15633 366 aaKnown RBP13.51□□□□□ -0.25
CHD4-203ENST00000535717 TRIM71Q2Q1W2 868 aaKnown RBP13.51□□□□□ -0.25
CHD4-203ENST00000535717 PLA2G4FQ68DD2 849 aa13.51□□□□□ -0.25
CHD4-203ENST00000535717 ATL3Q6DD88 541 aa13.51□□□□□ -0.25
CHD4-203ENST00000535717 RUFY4Q6ZNE9 571 aa13.51□□□□□ -0.25
CHD4-203ENST00000535717 LINC00301Q8NCQ3 95 aa13.51□□□□□ -0.25
CHD4-203ENST00000535717 CHAMP1Q96JM3 812 aa13.51□□□□□ -0.25
CHD4-203ENST00000535717 MMTAG2Q9BU76 263 aaKnown RBP13.51□□□□□ -0.25
CHD4-203ENST00000535717 PRKAG2Q9UGJ0 569 aa13.51□□□□□ -0.25
CHD4-203ENST00000535717 SEPT9Q9UHD8 586 aaPredicted RBP13.51□□□□□ -0.25
CHD4-203ENST00000535717 TUBE1Q9UJT0 475 aa13.51□□□□□ -0.25
CHD4-203ENST00000535717 FBXO2Q9UK22 296 aaPredicted RBP13.51□□□□□ -0.25
CHD4-203ENST00000535717 MORC2Q9Y6X9 1032 aaPredicted RBP13.51□□□□□ -0.25
CHD4-203ENST00000535717 UMODL1Q5DID0 1318 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 A0A087WWV3 80 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 TIMP1P01033 207 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 KLRC1P26715 233 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 YWHABP31946 246 aaKnown RBP13.5□□□□□ -0.25
CHD4-203ENST00000535717 CYP2C18P33260 490 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 CCT6AP40227 531 aaKnown RBP13.5□□□□□ -0.25
CHD4-203ENST00000535717 STK38Q15208 465 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 ECM1Q16610 540 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 HAUS3Q68CZ6 603 aa13.5□□□□□ -0.25
CHD4-203ENST00000535717 POTEGQ6S5H5 508 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms