RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	CASC1	Q6TDU7	716 aa		13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	TSHZ1	Q6ZSZ6	1077 aa		13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	ADHFE1	Q8IWW8	467 aa		13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	TNPO1	Q92973	898 aa	Known RBP	13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	P2RX5	Q93086	422 aa		13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	JADE2	Q9NQC1	790 aa		13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	TUBE1	Q9UJT0	475 aa		13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	RBM8A	Q9Y5S9	174 aa	Known RBP	13.23	□□□□□ -0.29
CTNND1-238	ENST00000534647	FAM86C2P	A6NEL3	165 aa		13.22	□□□□□ -0.29
CTNND1-238	ENST00000534647	SH2B2	O14492	632 aa	Predicted RBP	13.22	□□□□□ -0.29
CTNND1-238	ENST00000534647	PRC1	O43663	620 aa		13.22	□□□□□ -0.29
CTNND1-238	ENST00000534647	CTNNB1	P35222	781 aa		13.22	□□□□□ -0.29
CTNND1-238	ENST00000534647	SP4	Q02446	784 aa		13.22	□□□□□ -0.29
CTNND1-238	ENST00000534647	MTMR1	Q13613	665 aa		13.22	□□□□□ -0.29
CTNND1-238	ENST00000534647	IER5	Q5VY09	327 aa		13.22	□□□□□ -0.29
CTNND1-238	ENST00000534647	DNAJB3	Q8WWF6	145 aa		13.22	□□□□□ -0.29
CTNND1-238	ENST00000534647	GLG1	Q92896	1179 aa		13.22	□□□□□ -0.29
CTNND1-238	ENST00000534647	MYL10	Q9BUA6	226 aa		13.22	□□□□□ -0.29
CTNND1-238	ENST00000534647	FTHL17	Q9BXU8	183 aa		13.22	□□□□□ -0.29
CTNND1-238	ENST00000534647	KCNH6	Q9H252	994 aa		13.22	□□□□□ -0.29
CTNND1-238	ENST00000534647	PIEZO1	Q92508	2521 aa		13.22	□□□□□ -0.29
CTNND1-238	ENST00000534647	CCDC69	A6NI79	296 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	SPDYE3	A6NKU9	549 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	GRM6	O15303	877 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	MAP3K13	O43283	966 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	DCX	O43602	365 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	PLEKHA8P1	O95397	391 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	MMP1	P03956	469 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	INSRR	P14616	1297 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	MRPS6	P82932	125 aa	Known RBP	13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	HYAL1	Q12794	435 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	SMAD2	Q15796	467 aa	Known RBP	13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	PLPPR4	Q7Z2D5	763 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	RTN4RL1	Q86UN2	441 aa	Predicted RBP	13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	NME8	Q8N427	588 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	FANCB	Q8NB91	859 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	PCYT2	Q99447	389 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	UPF3B	Q9BZI7	483 aa	Known RBP	13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	CLDND1	Q9NY35	253 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	PCDHA6	Q9UN73	950 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	PLAGL2	Q9UPG8	496 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	PCDHA8	Q9Y5H6	950 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	PCDHA2	Q9Y5H9	948 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	CDY2A	Q9Y6F7	541 aa		13.21	□□□□□ -0.29
CTNND1-238	ENST00000534647	RALGAPA2	Q2PPJ7	1873 aa		13.21	□□□□□ -0.3
CTNND1-238	ENST00000534647	NFASC	O94856	1347 aa		13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	KDM3A	Q9Y4C1	1321 aa		13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	HMGB1	P09429	215 aa	Known RBP	13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	ADAM15	Q13444	863 aa		13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	CAMK1	Q14012	370 aa		13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	DSG2	Q14126	1118 aa		13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	BTG3	Q14201	252 aa	Predicted RBP	13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	NFXL1	Q6ZNB6	911 aa		13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	SGMS1	Q86VZ5	419 aa		13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	CMTR2	Q8IYT2	770 aa	Known RBP	13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	POP1	Q99575	1024 aa	Known RBP	13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	MXRA8	Q9BRK3	442 aa		13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	AGO3	Q9H9G7	860 aa	Known RBP	13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	JPH1	Q9HDC5	661 aa	Predicted RBP	13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	KCNH7	Q9NS40	1196 aa		13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	SLC9A2	Q9UBY0	812 aa		13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	TTC3	P53804	2025 aa		13.2	□□□□□ -0.3
CTNND1-238	ENST00000534647	MBTPS2	O43462	519 aa		13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	ATG7	O95352	703 aa		13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	FOS	P01100	380 aa	Predicted RBP	13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	STAG3L1	P0CL83	205 aa		13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	MARK3	P27448	753 aa		13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	SLC26A2	P50443	739 aa		13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	NECTIN1	Q15223	517 aa		13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	TMTC3	Q6ZXV5	915 aa		13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	NPAS4	Q8IUM7	802 aa		13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	CMTR1	Q8N1G2	835 aa	Known RBP	13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	LINC01599	Q8WXQ3	324 aa		13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	TMUB1	Q9BVT8	246 aa		13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	LSG1	Q9H089	658 aa	Known RBP	13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	AZI2	Q9H6S1	392 aa		13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	SLC12A7	Q9Y666	1083 aa		13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	MUC6	Q6W4X9	2439 aa		13.19	□□□□□ -0.3
CTNND1-238	ENST00000534647	IGSF9B	Q9UPX0	1349 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	IGKV6D-21	A0A0A0MT36	114 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	SMIM35	A0A1B0GVV1	85 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	SLC27A2	O14975	620 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	EYA4	O95677	639 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	CD52	P31358	61 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	IRS1	P35568	1242 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	STAT5B	P51692	787 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	DLX2	Q07687	328 aa	Predicted RBP	13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	KCNA1	Q09470	495 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	SMAD4	Q13485	552 aa	Known RBP	13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	PLCB4	Q15147	1175 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	UBE2S	Q16763	222 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	CSPP1	Q1MSJ5	1256 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	HERC4	Q5GLZ8	1057 aa	Predicted RBP	13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	EP400NL	Q6ZTU2	488 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	SPPL3	Q8TCT6	385 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	PPP2R3C	Q969Q6	453 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	CELF4	Q9BZC1	486 aa	Known RBP	13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	RIC8A	Q9NPQ8	531 aa		13.18	□□□□□ -0.3
CTNND1-238	ENST00000534647	PADI3	Q9ULW8	664 aa		13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms