RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, human

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD3-210	ENST00000534172	ZNF200	P98182	395 aa	Predicted RBP	4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	IRF9	Q00978	393 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	PKN1	Q16512	942 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	GORAB	Q5T7V8	394 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	POU5F2	Q8N7G0	328 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	ATL2	Q8NHH9	583 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	SIGLEC10	Q96LC7	697 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	GEMIN8	Q9NWZ8	242 aa	Known RBP	4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	SIT1	Q9Y3P8	196 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	PCDHA5	Q9Y5H7	936 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	TCAF2	A6NFQ2	919 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	BUB1B	O60566	1050 aa	Predicted RBP	4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	PTPN1	P18031	435 aa	Known RBP	4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	SDHB	P21912	280 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	FBLN1	P23142	703 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	GUCY2F	P51841	1108 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	PCBP1	Q15365	356 aa	Known RBP eCLIP	4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	PKN3	Q6P5Z2	889 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	STRA8	Q7Z7C7	330 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	NOSTRIN	Q8IVI9	506 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	WDR75	Q8IWA0	830 aa	Known RBP	4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	CCAR1	Q8IX12	1150 aa	Known RBP	4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	SH3RF2	Q8TEC5	729 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	PMM1	Q92871	262 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	FMNL2	Q96PY5	1086 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	RIC8B	Q9NVN3	520 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	ASB1	Q9Y576	335 aa		4.61	□□□□□ -1.67
CSMD3-210	ENST00000534172	TCRBV5S4A2T	A0A5A2	114 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	BPI	P17213	487 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	CDR1	P51861	262 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	EPHB1	P54762	984 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	IL2	P60568	153 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	DLG4	P78352	724 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	NFE2	Q16621	373 aa	Predicted RBP	4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	ZNF385B	Q569K4	471 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	RNF219	Q5W0B1	726 aa	Predicted RBP	4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	DPP8	Q6V1X1	898 aa	Predicted RBP	4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	SYDE1	Q6ZW31	735 aa	Predicted RBP	4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	TMEM151B	Q8IW70	566 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	CLEC4D	Q8WXI8	215 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	BCCIP	Q9P287	314 aa	Known RBP eCLIP	4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	SPO11	Q9Y5K1	396 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	WDR97	A6NE52	1622 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	BAZ1B	Q9UIG0	1483 aa	Known RBP	4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	MYOCOS	A0A1B0GUC4	107 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	EYA4	O95677	639 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	CHGB	P05060	677 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	ZBTB48	P10074	688 aa	Predicted RBP	4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	DSG1	Q02413	1049 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	VASN	Q6EMK4	673 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	CD300LD	Q6UXZ3	194 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	MORC4	Q8TE76	937 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	IRAK3	Q9Y616	596 aa		4.6	□□□□□ -1.67
CSMD3-210	ENST00000534172	FAM83G	A6ND36	823 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	SCD	O00767	359 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	FOXP2	O15409	715 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	TSPAN6	O43657	245 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	KATNA1	O75449	491 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	C4BPA	P04003	597 aa	Known RBP	4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	CD40	P25942	277 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	LSP1	P33241	339 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	MESP2	Q0VG99	397 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	EPHA7	Q15375	998 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	SKIDA1	Q1XH10	827 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	TEPP	Q6URK8	271 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	NECAB2	Q7Z6G3	386 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	ARRDC4	Q8NCT1	418 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	SMC1B	Q8NDV3	1235 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	WDR48	Q8TAF3	677 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	CD244	Q9BZW8	370 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	RXFP1	Q9HBX9	757 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	OXSM	Q9NWU1	459 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	ADAMTSL3	P82987	1691 aa		4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	PPRC1	Q5VV67	1664 aa	Known RBP	4.59	□□□□□ -1.67
CSMD3-210	ENST00000534172	LRG1	P02750	347 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	SESN3	P58005	492 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	PHC1	P78364	1004 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	FOXO4	P98177	505 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	MCL1	Q07820	350 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	LRRC32	Q14392	662 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	ERICH6B	Q5W0A0	696 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	KIAA1958	Q8N8K9	716 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	CALML6	Q8TD86	181 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	CLIC6	Q96NY7	704 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	ASPSCR1	Q9BZE9	553 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	DLL4	Q9NR61	685 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	USP36	Q9P275	1121 aa	Known RBP	4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	ARHGAP28	Q9P2N2	729 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	KCNG1	Q9UIX4	513 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	PRAMEF25	A6NGN4	478 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	FKBP9	O95302	570 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	TSPAN15	O95858	294 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	ATP2A2	P16615	1042 aa	Known RBP	4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	IGFBP6	P24592	240 aa	Predicted RBP	4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	DBP	Q10586	325 aa	Predicted RBP	4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	PPP2R5A	Q15172	486 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	LRRC41	Q15345	812 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	FKBP9P1	Q75LS8	142 aa		4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	CXXC5	Q7LFL8	322 aa	Known RBP	4.58	□□□□□ -1.68
CSMD3-210	ENST00000534172	IGDCC4	Q8TDY8	1250 aa		4.58	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 35 ms