RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 NAP1L3Q99457 506 aaPredicted RBP15.34■□□□□ 0.05
TCOF1-207ENST00000504761 PAIP2Q9BPZ3 127 aaKnown RBP15.34■□□□□ 0.05
TCOF1-207ENST00000504761 FERMT1Q9BQL6 677 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 REEP2Q9BRK0 252 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 TUBB2BQ9BVA1 445 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 ASIC3Q9UHC3 531 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 HYOU1Q9Y4L1 999 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 IKBKGQ9Y6K9 419 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 ZMYND10O75800 440 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 MFAP3P55082 362 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 SND1Q7KZF4 910 aaKnown RBP eCLIP15.34■□□□□ 0.05
TCOF1-207ENST00000504761 HDXQ7Z353 690 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 MSTO1Q9BUK6 570 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 EHD4Q9H223 541 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 RIOX1Q9H6W3 641 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 FAM198AQ9UFP1 575 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 IQCA1LA6NCM1 817 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 LRRC53A6NM62 1247 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 EYA4O95677 639 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 FERP16591 822 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 KCNB1Q14721 858 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 C9orf131Q5VYM1 1079 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 PPP4R3CPQ6ZMV5 832 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 KSR1Q8IVT5 923 aa15.34■□□□□ 0.05
TCOF1-207ENST00000504761 ZNF365Q70YC5 407 aa15.33■□□□□ 0.05
TCOF1-207ENST00000504761 FAM213AQ9BRX8 229 aa15.33■□□□□ 0.05
TCOF1-207ENST00000504761 ZNF302Q9NR11 478 aa15.33■□□□□ 0.05
TCOF1-207ENST00000504761 MTRF1LQ9UGC7 380 aaKnown RBP15.33■□□□□ 0.05
TCOF1-207ENST00000504761 ZEB2O60315 1214 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 KIF22Q14807 665 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 ZNF394Q53GI3 561 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 PLA2G4FQ68DD2 849 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 XXYLT1Q8NBI6 393 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 MCPH1Q8NEM0 835 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 CYP2W1Q8TAV3 490 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 JPH2Q9BR39 696 aaPredicted RBP15.33■□□□□ 0.04
TCOF1-207ENST00000504761 ATP6V0A4Q9HBG4 840 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 KCNH7Q9NS40 1196 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 C19orf81C9J6K1 198 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 FOXP2O15409 715 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 NSFP46459 744 aaKnown RBP15.33■□□□□ 0.04
TCOF1-207ENST00000504761 NPEPPSP55786 919 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 SCARA5Q6ZMJ2 495 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 RBM46Q8TBY0 533 aaKnown RBP15.33■□□□□ 0.04
TCOF1-207ENST00000504761 DDX41Q9UJV9 622 aaKnown RBP15.33■□□□□ 0.04
TCOF1-207ENST00000504761 CDC23Q9UJX2 597 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 TMX2Q9Y320 296 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 ZNF233A6NK53 670 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 TUBBP07437 444 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 FDX1P10109 184 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 YWHABP31946 246 aaKnown RBP15.33■□□□□ 0.04
TCOF1-207ENST00000504761 ZC2HC1CQ53FD0 456 aaPredicted RBP15.33■□□□□ 0.04
TCOF1-207ENST00000504761 HAUS6Q7Z4H7 955 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 CATSPER3Q86XQ3 398 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 RNF34Q969K3 372 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 MMP19Q99542 508 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 JPH1Q9HDC5 661 aaPredicted RBP15.33■□□□□ 0.04
TCOF1-207ENST00000504761 SLC9A2Q9UBY0 812 aa15.33■□□□□ 0.04
TCOF1-207ENST00000504761 KRIT1O00522 736 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 MSH4O15457 936 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 NAALADL2Q58DX5 795 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 TYW1Q9NV66 732 aaKnown RBP15.32■□□□□ 0.04
TCOF1-207ENST00000504761 PARP2Q9UGN5 583 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 HPSEQ9Y251 543 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 NFIBO00712 420 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 RHOBTB3O94955 611 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 IFNB1P01574 187 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 GUCY2FP51841 1108 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 MRPS25P82663 173 aaKnown RBP15.32■□□□□ 0.04
TCOF1-207ENST00000504761 SHROOM1Q2M3G4 852 aaPredicted RBP15.32■□□□□ 0.04
TCOF1-207ENST00000504761 ALKBH5Q6P6C2 394 aaKnown RBP15.32■□□□□ 0.04
TCOF1-207ENST00000504761 SCYL3Q8IZE3 742 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 SLC17A8Q8NDX2 589 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 GAKO14976 1311 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 A0A1W2PRG0 241 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 SFNP31947 248 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 NFX1Q12986 1120 aaKnown RBP15.32■□□□□ 0.04
TCOF1-207ENST00000504761 WHAMMP3Q1A5X7 153 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 BBXQ8WY36 941 aaPredicted RBP15.32■□□□□ 0.04
TCOF1-207ENST00000504761 C7orf25Q9BPX7 421 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 KCNF1Q9H3M0 494 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 DNAJC12Q9UKB3 198 aa15.32■□□□□ 0.04
TCOF1-207ENST00000504761 BZW2Q9Y6E2 419 aaKnown RBP15.32■□□□□ 0.04
TCOF1-207ENST00000504761 P4HA1P13674 534 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 NEDD9Q14511 834 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 TAF12Q16514 161 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 SCYL2Q6P3W7 929 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 PROM2Q8N271 834 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 ATRIPQ8WXE1 791 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 SPATA33Q96N06 139 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 IDI2Q9BXS1 227 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 IRX2Q9BZI1 471 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-207ENST00000504761 PDGFDQ9GZP0 370 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-207ENST00000504761 UTP11Q9Y3A2 253 aaKnown RBP15.31■□□□□ 0.04
TCOF1-207ENST00000504761 ATP2A1O14983 1001 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 OPA1O60313 960 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 TCP1P17987 556 aaKnown RBP15.31■□□□□ 0.04
TCOF1-207ENST00000504761 SPDYE2Q495Y8 402 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 RHPN2Q8IUC4 686 aa15.31■□□□□ 0.04
TCOF1-207ENST00000504761 IFT20Q8IY31 132 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms