RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 PCDHGA2Q9Y5H1 932 aa8.56□□□□□ -1.04
COL9A1-209ENST00000489861 USP9XQ93008 2570 aaPredicted RBP8.56□□□□□ -1.04
COL9A1-209ENST00000489861 F5P12259 2224 aa8.56□□□□□ -1.04
COL9A1-209ENST00000489861 MYH15Q9Y2K3 1946 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 CLASP2O75122 1294 aaKnown RBP8.55□□□□□ -1.04
COL9A1-209ENST00000489861 NCLP19338 710 aaKnown RBP8.55□□□□□ -1.04
COL9A1-209ENST00000489861 CD52P31358 61 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 CSTF1Q05048 431 aaKnown RBP8.55□□□□□ -1.04
COL9A1-209ENST00000489861 ATAT1Q5SQI0 421 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 SPOUT1Q5T280 376 aaKnown RBP8.55□□□□□ -1.04
COL9A1-209ENST00000489861 XRRA1Q6P2D8 792 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 BTNL9Q6UXG8 535 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 RUFY4Q6ZNE9 571 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 CLASRPQ8N2M8 674 aaKnown RBP8.55□□□□□ -1.04
COL9A1-209ENST00000489861 TMEM57Q8N5G2 664 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 ATRIPQ8WXE1 791 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 MRPS27Q92552 414 aaKnown RBP8.55□□□□□ -1.04
COL9A1-209ENST00000489861 NELL1Q92832 810 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 SPATA33Q96N06 139 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 TMEM121BQ9BXQ6 578 aaPredicted RBP8.55□□□□□ -1.04
COL9A1-209ENST00000489861 BCAS3Q9H6U6 928 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 ENTPD7Q9NQZ7 604 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 TNNQ9UQP3 1299 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 LZTS1Q9Y250 596 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 MRVI1Q9Y6F6 885 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 SPAG17Q6Q759 2223 aa8.55□□□□□ -1.04
COL9A1-209ENST00000489861 GREB1Q4ZG55 1949 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 HECTD1Q9ULT8 2610 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 NMT2O60551 498 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 N4BP1O75113 896 aaKnown RBP8.54□□□□□ -1.04
COL9A1-209ENST00000489861 LGALS2P05162 132 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 TSPY3P0CV98 308 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 TSPY8P0CW00 308 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 TFAP4Q01664 338 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 SP2Q02086 613 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 STXBP2Q15833 593 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 SOWAHCQ53LP3 525 aaPredicted RBP8.54□□□□□ -1.04
COL9A1-209ENST00000489861 CELF3Q5SZQ8 465 aaKnown RBP8.54□□□□□ -1.04
COL9A1-209ENST00000489861 SYDE2Q5VT97 1194 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 TMC5Q6UXY8 1006 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 TSHZ1Q6ZSZ6 1077 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 PJA1Q8NG27 643 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 GPR152Q8TDT2 470 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 LMBR1Q8WVP7 490 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 ACSF2Q96CM8 615 aaPredicted RBP8.54□□□□□ -1.04
COL9A1-209ENST00000489861 KIF1BPQ96EK5 621 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 BORCS6Q96GS4 357 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 STRBPQ96SI9 672 aaKnown RBP8.54□□□□□ -1.04
COL9A1-209ENST00000489861 CWH43Q9H720 699 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 EPB41L4AQ9HCS5 686 aaPredicted RBP8.54□□□□□ -1.04
COL9A1-209ENST00000489861 NGRNQ9NPE2 291 aaKnown RBP8.54□□□□□ -1.04
COL9A1-209ENST00000489861 TYW1Q9NV66 732 aaKnown RBP8.54□□□□□ -1.04
COL9A1-209ENST00000489861 IGSF9Q9P2J2 1179 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 FBXO4Q9UKT5 387 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 DDX19BQ9UMR2 479 aa8.54□□□□□ -1.04
COL9A1-209ENST00000489861 TENM4Q6N022 2769 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 LAMA4Q16363 1823 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 C2orf71A6NGG8 1288 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 TBC1D4O60343 1298 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 RAB11FIP3O75154 756 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 GGPS1O95749 300 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 STAG3L1P0CL83 205 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 SCG2P13521 617 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 IBSPP21815 317 aaPredicted RBP8.53□□□□□ -1.04
COL9A1-209ENST00000489861 ARHGAP4P98171 946 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 PLCB3Q01970 1234 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 UBE3CQ15386 1083 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 LPAL2Q16609 132 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 CCDC96Q2M329 555 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 FAM102BQ5T8I3 360 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 TSSK4Q6SA08 328 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 OTOP3Q7RTS5 596 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 TMC7Q7Z402 723 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 TRIM50Q86XT4 487 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 SLC44A3Q8N4M1 653 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 MRPL43Q8N983 215 aaKnown RBP8.53□□□□□ -1.04
COL9A1-209ENST00000489861 SYTL5Q8TDW5 730 aaPredicted RBP8.53□□□□□ -1.04
COL9A1-209ENST00000489861 NSUN6Q8TEA1 469 aaKnown RBP8.53□□□□□ -1.04
COL9A1-209ENST00000489861 GPKOWQ92917 476 aaPredicted RBP eCLIP8.53□□□□□ -1.04
COL9A1-209ENST00000489861 MAP4K1Q92918 833 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.53□□□□□ -1.04
COL9A1-209ENST00000489861 ARHGEF3Q9NR81 526 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 IL17RBQ9NRM6 502 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 SPATA6Q9NWH7 488 aaPredicted RBP8.53□□□□□ -1.04
COL9A1-209ENST00000489861 ZSCAN32Q9NX65 697 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 GMEB2Q9UKD1 530 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 SPTA1P02549 2419 aa8.53□□□□□ -1.04
COL9A1-209ENST00000489861 FRMPD2Q68DX3 1309 aaPredicted RBP8.53□□□□□ -1.04
COL9A1-209ENST00000489861 ACACAQ13085 2346 aa8.52□□□□□ -1.05
COL9A1-209ENST00000489861 TBKBP1A7MCY6 615 aa8.52□□□□□ -1.05
COL9A1-209ENST00000489861 TM4SF5O14894 197 aa8.52□□□□□ -1.05
COL9A1-209ENST00000489861 LAMTOR5O43504 91 aa8.52□□□□□ -1.05
COL9A1-209ENST00000489861 EIF3JO75822 258 aaKnown RBP8.52□□□□□ -1.05
COL9A1-209ENST00000489861 IFIT2P09913 472 aaKnown RBP8.52□□□□□ -1.05
COL9A1-209ENST00000489861 GNAT1P11488 350 aa8.52□□□□□ -1.05
COL9A1-209ENST00000489861 EPCAMP16422 314 aa8.52□□□□□ -1.05
COL9A1-209ENST00000489861 EIF2AK2P19525 551 aaKnown RBP8.52□□□□□ -1.05
COL9A1-209ENST00000489861 UBA1P22314 1058 aaKnown RBP8.52□□□□□ -1.05
COL9A1-209ENST00000489861 PBX3P40426 434 aa8.52□□□□□ -1.05
COL9A1-209ENST00000489861 ZSCAN25Q6NSZ9 544 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms