RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 CEP128Q6ZU80 1094 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 ILDR2Q71H61 639 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 USP17L1Q7RTZ2 530 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 GPBP1Q86WP2 473 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 TEX11Q8IYF3 940 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 TPCN2Q8NHX9 752 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 CTNNBL1Q8WYA6 563 aaPredicted RBP6.67□□□□□ -1.34
HERC4-209ENST00000473533 TATDN2Q93075 761 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 DNAJC19Q96DA6 116 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 PGM2Q96G03 612 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 RSRC1Q96IZ7 334 aaKnown RBP6.67□□□□□ -1.34
HERC4-209ENST00000473533 SEC16BQ96JE7 1060 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 PIGSQ96S52 555 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 PLVAPQ9BX97 442 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 VEZTQ9HBM0 779 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 BCCIPQ9P287 314 aaKnown RBP eCLIP6.67□□□□□ -1.34
HERC4-209ENST00000473533 FAM153AQ9UHL3 310 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 SLC12A6Q9UHW9 1150 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 CNOT7Q9UIV1 285 aaKnown RBP6.67□□□□□ -1.34
HERC4-209ENST00000473533 NAGPAQ9UK23 515 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 MYH10P35580 1976 aa6.67□□□□□ -1.34
HERC4-209ENST00000473533 SYNGAP1Q96PV0 1343 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 CNTNAP4Q9C0A0 1308 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 AGTP01019 485 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 NUDT17P0C025 328 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 NR2F2P24468 414 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 XRCC4Q13426 336 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 NFIL3Q16649 462 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 ANKRD20A8PQ5CZ79 823 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 WLSQ5T9L3 541 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 NBPF5PQ86XG9 351 aaPredicted RBP6.66□□□□□ -1.34
HERC4-209ENST00000473533 RHOT2Q8IXI1 618 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 UBL4BQ8N7F7 174 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 NEK9Q8TD19 979 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 SH3RF3Q8TEJ3 882 aaPredicted RBP6.66□□□□□ -1.34
HERC4-209ENST00000473533 TGFBRAP1Q8WUH2 860 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 RFFLQ8WZ73 363 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 IFT74Q96LB3 600 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 MKNK1Q9BUB5 465 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 BATF3Q9NR55 127 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 TYW1Q9NV66 732 aaKnown RBP6.66□□□□□ -1.34
HERC4-209ENST00000473533 DONSONQ9NYP3 566 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 SALL4Q9UJQ4 1053 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 DNM3Q9UQ16 869 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 ROBO1Q9Y6N7 1651 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 NCANO14594 1321 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 FRMD3A2A2Y4 597 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 TLR2O60603 784 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 PPFIA2O75334 1257 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 TBCAO75347 108 aaKnown RBP6.66□□□□□ -1.34
HERC4-209ENST00000473533 TMEM253P0C7T8 217 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 UCHL3P15374 230 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 PDE6BP35913 854 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 KNOP1Q1ED39 458 aaKnown RBP6.66□□□□□ -1.34
HERC4-209ENST00000473533 CRELD2Q6UXH1 353 aaPredicted RBP6.66□□□□□ -1.34
HERC4-209ENST00000473533 TMC3Q7Z5M5 1100 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 DAAM2Q86T65 1068 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 COL23A1Q86Y22 540 aaPredicted RBP6.66□□□□□ -1.34
HERC4-209ENST00000473533 LRRC57Q8N9N7 239 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 CELF1Q92879 486 aaKnown RBP6.66□□□□□ -1.34
HERC4-209ENST00000473533 DYNLL2Q96FJ2 89 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 FAM163AQ96GL9 167 aaPredicted RBP6.66□□□□□ -1.34
HERC4-209ENST00000473533 HOMER3Q9NSC5 361 aa6.66□□□□□ -1.34
HERC4-209ENST00000473533 DDX20Q9UHI6 824 aaKnown RBP6.66□□□□□ -1.34
HERC4-209ENST00000473533 NOVA2Q9UNW9 492 aaKnown RBP6.66□□□□□ -1.34
HERC4-209ENST00000473533 XIRP1Q702N8 1843 aaKnown RBP6.66□□□□□ -1.34
HERC4-209ENST00000473533 ESYT3A0FGR9 886 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 H0YGN5 161 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 MYO1FO00160 1098 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 FOSP01100 380 aaPredicted RBP6.65□□□□□ -1.34
HERC4-209ENST00000473533 ELF1P32519 619 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 DHX9Q08211 1270 aaKnown RBP6.65□□□□□ -1.34
HERC4-209ENST00000473533 CETN1Q12798 172 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 RIPK1Q13546 671 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 RC3H1Q5TC82 1133 aaKnown RBP6.65□□□□□ -1.34
HERC4-209ENST00000473533 CYB5D1Q6P9G0 228 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 CERKQ8TCT0 537 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 LRRC15Q8TF66 581 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 EEF2KMTQ96G04 330 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 ANKRD27Q96NW4 1050 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 XPO6Q96QU8 1125 aaKnown RBP6.65□□□□□ -1.34
HERC4-209ENST00000473533 JPH2Q9BR39 696 aaPredicted RBP6.65□□□□□ -1.34
HERC4-209ENST00000473533 TMEM109Q9BVC6 243 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 ROPN1BQ9BZX4 212 aaPredicted RBP6.65□□□□□ -1.34
HERC4-209ENST00000473533 EHD4Q9H223 541 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 ROPN1Q9HAT0 212 aaPredicted RBP6.65□□□□□ -1.34
HERC4-209ENST00000473533 ATP6V0A4Q9HBG4 840 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 EHD2Q9NZN4 543 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 MTUS1Q9ULD2 1270 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 ODF2LQ9ULJ1 636 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 NFS1Q9Y697 457 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 GPR75-ASB3A0A0A6YYF3 556 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 F8VZ95 297 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 EIF3DO15371 548 aaKnown RBP eCLIP6.65□□□□□ -1.34
HERC4-209ENST00000473533 CHRNA3P32297 505 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 DNA2P51530 1060 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 PTENP60484 403 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 ARID5AQ03989 594 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 BMT2Q1RMZ1 405 aa6.65□□□□□ -1.34
HERC4-209ENST00000473533 METTL13Q8N6R0 699 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms