RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PYCARDQ9ULZ3 195 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 ARL2BPQ9Y2Y0 163 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 GSNP06396 782 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 COPS2P61201 443 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 DDX42Q86XP3 938 aaKnown RBP eCLIP14.24□□□□□ -0.13
COL6A3-209ENST00000472056 NFATC2IPQ8NCF5 419 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 NOVA2Q9UNW9 492 aaKnown RBP14.24□□□□□ -0.13
COL6A3-209ENST00000472056 CTIFO43310 598 aaKnown RBP14.24□□□□□ -0.13
COL6A3-209ENST00000472056 HSPA4LO95757 839 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 NPR1P16066 1061 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 HSPA9P38646 679 aaKnown RBP14.24□□□□□ -0.13
COL6A3-209ENST00000472056 IFRD2Q12894 506 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-209ENST00000472056 LRIG3Q6UXM1 1119 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 KIAA1586Q9HCI6 787 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 SYBUQ9NX95 663 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 CEP72Q9P209 647 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 GGA1Q9UJY5 639 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 SERPINB1P30740 379 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 CIITAP33076 1130 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 DYDC2Q96IM9 177 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 TGS1Q96RS0 853 aaKnown RBP14.24□□□□□ -0.13
COL6A3-209ENST00000472056 NINQ8N4C6 2090 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 NLRP11P59045 1033 aaKnown RBP14.23□□□□□ -0.13
COL6A3-209ENST00000472056 ACCSQ96QU6 501 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 WNT8AQ9H1J5 351 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 AATFQ9NY61 560 aaKnown RBP eCLIP14.23□□□□□ -0.13
COL6A3-209ENST00000472056 NOD1Q9Y239 953 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 PCDHB4Q9Y5E5 795 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 PCDHA5Q9Y5H7 936 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 MYH1P12882 1939 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 MYH2Q9UKX2 1941 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 MYH4Q9Y623 1939 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 CASP2P42575 452 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 RAB14P61106 215 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 GCKRQ14397 625 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 ATP7BP35670 1465 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 ACADSP16219 412 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 CAPRIN1Q14444 709 aaKnown RBP14.23□□□□□ -0.13
COL6A3-209ENST00000472056 THAP11Q96EK4 314 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 CXorf56Q9H5V9 222 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 ZNF555Q8NEP9 628 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 DDI1Q8WTU0 396 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 BTBD6Q96KE9 485 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 AS3MTQ9HBK9 375 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 GPBP1L1Q9HC44 474 aaPredicted RBP14.23□□□□□ -0.13
COL6A3-209ENST00000472056 PCDHA4Q9UN74 947 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 HIC1Q14526 733 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 MTHFSDQ2M296 383 aaKnown RBP14.23□□□□□ -0.13
COL6A3-209ENST00000472056 MAP4K1Q92918 833 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 PPARGC1AQ9UBK2 798 aaKnown RBP14.23□□□□□ -0.13
COL6A3-209ENST00000472056 POLR2MP0CAP2 368 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 KAZNQ674X7 775 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 SLFN12LQ6IEE8 588 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 SPOPLQ6IQ16 392 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 CYP4F22Q6NT55 531 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 NLRP14Q86W24 1093 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 RFX6Q8HWS3 928 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 NEUROG2Q9H2A3 272 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.23□□□□□ -0.13
COL6A3-209ENST00000472056 TET3O43151 1660 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 PRPSAP2O60256 369 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 RAPGEF3O95398 923 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 C2orf54Q08AI8 447 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 EFTUD2Q15029 972 aaKnown RBP eCLIP14.23□□□□□ -0.13
COL6A3-209ENST00000472056 ATP11CQ8NB49 1132 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 CCDC134Q9H6E4 229 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 PARVGQ9HBI0 331 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 SMYD2Q9NRG4 433 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 ABHD10Q9NUJ1 306 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 ATP11BQ9Y2G3 1177 aa14.23□□□□□ -0.13
COL6A3-209ENST00000472056 TLR3O15455 904 aaKnown RBP14.22□□□□□ -0.13
COL6A3-209ENST00000472056 TECP42680 631 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 LAMB3Q13751 1172 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 TBC1D1Q86TI0 1168 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-209ENST00000472056 ARMT1Q9H993 441 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 ZNF229Q9UJW7 825 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 NFU1Q9UMS0 254 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 HAUS5O94927 633 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 APOA4P06727 396 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 C19orf60Q96EN9 201 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 EHD2Q9NZN4 543 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 MKL2Q9ULH7 1088 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 STK36Q9NRP7 1315 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 ADAMTS12P58397 1594 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 GFPT2O94808 682 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 KRT7P08729 469 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 MAP4P27816 1152 aaKnown RBP14.22□□□□□ -0.13
COL6A3-209ENST00000472056 CCDC17Q96LX7 622 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.22□□□□□ -0.13
COL6A3-209ENST00000472056 RNF103-CHMP3A0A140T963 221 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 ZSCAN20P17040 1043 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-209ENST00000472056 DARS2Q6PI48 645 aaKnown RBP14.22□□□□□ -0.13
COL6A3-209ENST00000472056 CNBD1Q8NA66 436 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 DACH2Q96NX9 599 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 GGCXP38435 758 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 DPCR1Q3MIW9 517 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 ENOSF1Q7L5Y1 443 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 PLA2G4DQ86XP0 818 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 NELFCDQ8IXH7 590 aa14.22□□□□□ -0.13
COL6A3-209ENST00000472056 ANTXR1Q9H6X2 564 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms