RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CREB3O43889 395 aa6.28□□□□□ -1.4
CCDC88A-210ENST00000468534 EPHA5P54756 1037 aa6.28□□□□□ -1.4
CCDC88A-210ENST00000468534 RRADP55042 308 aa6.28□□□□□ -1.4
CCDC88A-210ENST00000468534 RAB33AQ14088 237 aa6.28□□□□□ -1.4
CCDC88A-210ENST00000468534 ZNF568Q3ZCX4 644 aa6.28□□□□□ -1.4
CCDC88A-210ENST00000468534 BTBD8Q5XKL5 378 aa6.28□□□□□ -1.4
CCDC88A-210ENST00000468534 TCTN3Q6NUS6 607 aa6.28□□□□□ -1.4
CCDC88A-210ENST00000468534 SPATC1Q76KD6 591 aa6.28□□□□□ -1.4
CCDC88A-210ENST00000468534 SLC43A3Q8NBI5 491 aa6.28□□□□□ -1.4
CCDC88A-210ENST00000468534 SH3RF2Q8TEC5 729 aa6.28□□□□□ -1.4
CCDC88A-210ENST00000468534 SORCS2Q96PQ0 1159 aa6.28□□□□□ -1.4
CCDC88A-210ENST00000468534 RIC8BQ9NVN3 520 aa6.28□□□□□ -1.4
CCDC88A-210ENST00000468534 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 ESYT3A0FGR9 886 aa6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 CCDC85CA6NKD9 419 aa6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 HMGA2P52926 109 aa6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 IGBP1P78318 339 aa6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 USP10Q14694 798 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 R3HDM1Q15032 1099 aaKnown RBP6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 EGFLAMQ63HQ2 1017 aa6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 TAX1BP1Q86VP1 789 aa6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 REXO1L1PQ8IX06 675 aa6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 GMLQ99445 158 aa6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 SPATA9Q9BWV2 254 aa6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 SEC61A2Q9H9S3 476 aa6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 ARHGAP28Q9P2N2 729 aa6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 PFDN2Q9UHV9 154 aa6.27□□□□□ -1.41
CCDC88A-210ENST00000468534 hCG_2014768A0A024R1R8 64 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 TLDC2A0PJX2 215 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 SUV39H1O43463 412 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 SLPIP03973 132 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 PTPN1P18031 435 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 KRT15P19012 456 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 DBPQ10586 325 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 FOXD4Q12950 439 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 PAK1Q13153 545 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 PTPROQ16827 1216 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 HS1BP3Q53T59 392 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 ARHGAP36Q6ZRI8 547 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 EP400NLQ6ZTU2 488 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 PMM1Q92871 262 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 NEIL1Q96FI4 390 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 ADOQ96SZ5 270 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 CDC6Q99741 560 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 MRIQ9BWK5 157 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 KATNBL1Q9H079 304 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 CATSPERZQ9NTU4 200 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 ZFR2Q9UPR6 939 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 HS3ST3A1Q9Y663 406 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 RPS6KL1Q9Y6S9 549 aa6.26□□□□□ -1.41
CCDC88A-210ENST00000468534 FAM90A27PA6NNH2 459 aa6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 KCNK3O14649 394 aa6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 FZD7O75084 574 aa6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 SRGAP2CP0DJJ0 459 aa6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 NOLC1Q14978 699 aaKnown RBP eCLIP6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 WDR72Q3MJ13 1102 aa6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 KRBA2Q6ZNG9 492 aa6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 USP51Q70EK9 711 aa6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 PTRH1Q86Y79 214 aaKnown RBP6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 SECISBP2LQ93073 1101 aaKnown RBP6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 CARD11Q9BXL7 1154 aa6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 ZNF341Q9BYN7 854 aa6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 PDGFDQ9GZP0 370 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 MAF1Q9H063 256 aa6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 SEMA4AQ9H3S1 761 aa6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 SRPK3Q9UPE1 567 aa6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 PCDHA8Q9Y5H6 950 aa6.25□□□□□ -1.41
CCDC88A-210ENST00000468534 AQP7O14520 342 aa6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 U2SURPO15042 1029 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 STK10O94804 968 aaKnown RBP6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 PYGMP11217 842 aa6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 POLD1P28340 1107 aa6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 ACVRL1P37023 503 aa6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 ADCY8P40145 1251 aa6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 RAC3P60763 192 aa6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 PRKD1Q15139 912 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 GPR19Q15760 415 aa6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 MTERF2Q49AM1 385 aa6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 HSP90AB2PQ58FF8 381 aa6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 SDE2Q6IQ49 451 aa6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 CLEC4GQ6UXB4 293 aa6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 NLGN4XQ8N0W4 816 aa6.24□□□□□ -1.41
CCDC88A-210ENST00000468534 TRBV23-1A0A0A0MS06 115 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 PRAMEF25A6NGN4 478 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 CYR61O00622 381 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 MAN2B1O00754 1011 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 SH3BP5O60239 455 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 PDE6AP16499 860 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 ST5P78524 1137 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 GUCY1A3Q02108 690 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 SSRP1Q08945 709 aaKnown RBP6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 RNF151Q2KHN1 245 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 FAM209AQ5JX71 171 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 FOXB2Q5VYV0 432 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 DPP8Q6V1X1 898 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 OSTM1Q86WC4 334 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 CKAP2LQ8IYA6 745 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 FUKQ8N0W3 1084 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 FBXW5Q969U6 566 aa6.23□□□□□ -1.41
CCDC88A-210ENST00000468534 IPO9Q96P70 1041 aaKnown RBP6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms