RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 USP17L10C9JJH3 530 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 RBAK-RBAKDNI3L0D1 243 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 TREHO43280 583 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 NBNO60934 754 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 SNAI1O95863 264 aaPredicted RBP6.33□□□□□ -1.4
HMGB1-207ENST00000468384 PGK2P07205 417 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 SRGAP2BP0DMP2 458 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 FCER1AP12319 257 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 HOXB8P17481 243 aaPredicted RBP6.33□□□□□ -1.4
HMGB1-207ENST00000468384 EIF2S2P20042 333 aaKnown RBP6.33□□□□□ -1.4
HMGB1-207ENST00000468384 SOX11P35716 441 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 CAP2P40123 477 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 RGS3P49796 1198 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 NRLP54845 237 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 CTSWP56202 376 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 TNFAIP2Q03169 654 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 ZNF792Q3KQV3 632 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 TBC1D9Q6ZT07 1266 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 FMNL3Q8IVF7 1028 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 TTLL11Q8NHH1 800 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 PLBD2Q8NHP8 589 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 RTF1Q92541 710 aaKnown RBP6.33□□□□□ -1.4
HMGB1-207ENST00000468384 FCRL3Q96P31 734 aaPredicted RBP6.33□□□□□ -1.4
HMGB1-207ENST00000468384 SPATC1LQ9H0A9 340 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 VRTNQ9H8Y1 702 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 DIS3Q9Y2L1 958 aaKnown RBP6.33□□□□□ -1.4
HMGB1-207ENST00000468384 RWDD3Q9Y3V2 267 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 DOCK2Q92608 1830 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 ICE1Q9Y2F5 2266 aa6.33□□□□□ -1.4
HMGB1-207ENST00000468384 PKD1L1Q8TDX9 2849 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 MICAL3Q7RTP6 2002 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 CRYBG3Q68DQ2 2970 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 TEX51A0A1B0GUA7 166 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 KRTAP9-7A8MTY7 169 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 H0Y626 953 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 ENTPD3O75355 529 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 TRIM16O95361 564 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 EOMESO95936 686 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 PCCAP05165 728 aaPredicted RBP6.32□□□□□ -1.4
HMGB1-207ENST00000468384 TDGF1P13385 188 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 ADSSP30520 456 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 SEMA3FQ13275 785 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 KCNC3Q14003 757 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 DCTN1Q14203 1278 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 DUSP6Q16828 381 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 CCDC144BQ3MJ40 725 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 TAF1BQ53T94 588 aaPredicted RBP6.32□□□□□ -1.4
HMGB1-207ENST00000468384 CES5AQ6NT32 575 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 XRRA1Q6P2D8 792 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 CATSPERGQ6ZRH7 1159 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 ZC3H18Q86VM9 953 aaKnown RBP6.32□□□□□ -1.4
HMGB1-207ENST00000468384 DEFB124Q8NES8 71 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 SPPL3Q8TCT6 385 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 TBC1D22AQ8WUA7 517 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 MPHOSPH8Q99549 860 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 ARRDC1-AS1Q9H2J1 176 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 MROH8Q9H579 483 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 DKK4Q9UBT3 224 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 MAN2B2Q9Y2E5 1009 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 RNF114Q9Y508 228 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 PATJQ8NI35 1801 aa6.32□□□□□ -1.4
HMGB1-207ENST00000468384 ASTN1O14525 1302 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 FRMPD2Q68DX3 1309 aaPredicted RBP6.31□□□□□ -1.4
HMGB1-207ENST00000468384 GREB1Q4ZG55 1949 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 ERVH48-1M5A8F1 160 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 SRFP11831 508 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 SELPP16109 830 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 ITPKBP27987 946 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 MTHFRP42898 656 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 CHAF1AQ13111 956 aaPredicted RBP6.31□□□□□ -1.4
HMGB1-207ENST00000468384 ACVR2BQ13705 512 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 FSCN1Q16658 493 aaKnown RBP6.31□□□□□ -1.4
HMGB1-207ENST00000468384 DCLRE1AQ6PJP8 1040 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 SND1Q7KZF4 910 aaKnown RBP eCLIP6.31□□□□□ -1.4
HMGB1-207ENST00000468384 NCAPG2Q86XI2 1143 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 MMP21Q8N119 569 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 GPR152Q8TDT2 470 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 AFAP1L1Q8TED9 768 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 CLP1Q92989 425 aaKnown RBP6.31□□□□□ -1.4
HMGB1-207ENST00000468384 TOP1MTQ969P6 601 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 KLHL5Q96PQ7 755 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 CDCA3Q99618 268 aaPredicted RBP6.31□□□□□ -1.4
HMGB1-207ENST00000468384 PLVAPQ9BX97 442 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 ADAM7Q9H2U9 754 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 TSC2P49815 1807 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 ZMYM2Q9UBW7 1377 aa6.31□□□□□ -1.4
HMGB1-207ENST00000468384 ATP9BO43861 1147 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 ZEB2O60315 1214 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 PARNO95453 639 aaKnown RBP6.3□□□□□ -1.4
HMGB1-207ENST00000468384 ITGB1P05556 798 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 MYF5P13349 255 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 JUNDP17535 347 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 HIBADHP31937 336 aaKnown RBP6.3□□□□□ -1.4
HMGB1-207ENST00000468384 RDXP35241 583 aaKnown RBP6.3□□□□□ -1.4
HMGB1-207ENST00000468384 ZNF76P36508 570 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 IL12RB1P42701 662 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 STARD6P59095 220 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 SIM1P81133 766 aaPredicted RBP6.3□□□□□ -1.4
HMGB1-207ENST00000468384 ITIH3Q06033 890 aa6.3□□□□□ -1.4
HMGB1-207ENST00000468384 CCDC27Q2M243 656 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms