RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 TPCN2Q8NHX9 752 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 SEMA4AQ9H3S1 761 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 LUC7LQ9NQ29 371 aaKnown RBP12.75□□□□□ -0.37
CPSF3-202ENST00000460593 UTP11Q9Y3A2 253 aaKnown RBP12.75□□□□□ -0.37
CPSF3-202ENST00000460593 ABCB4P21439 1286 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 PRDX5P30044 214 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 IRX1P78414 480 aaPredicted RBP12.75□□□□□ -0.37
CPSF3-202ENST00000460593 MTMR3Q13615 1198 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 CDCA2Q69YH5 1023 aaPredicted RBP12.75□□□□□ -0.37
CPSF3-202ENST00000460593 PIGWQ7Z7B1 504 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 FBXO25Q8TCJ0 367 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 ACTRT1Q8TDG2 376 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 SNX29Q8TEQ0 813 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 TSG101Q99816 390 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 LBHD1Q9BQE6 289 aaPredicted RBP12.75□□□□□ -0.37
CPSF3-202ENST00000460593 SWAP70Q9UH65 585 aa12.75□□□□□ -0.37
CPSF3-202ENST00000460593 CICQ96RK0 1608 aaPredicted RBP12.75□□□□□ -0.37
CPSF3-202ENST00000460593 ZBTB48P10074 688 aaPredicted RBP12.74□□□□□ -0.37
CPSF3-202ENST00000460593 IGHMBP2P38935 993 aaKnown RBP12.74□□□□□ -0.37
CPSF3-202ENST00000460593 MIS18BP1Q6P0N0 1132 aa12.74□□□□□ -0.37
CPSF3-202ENST00000460593 MYOCDQ8IZQ8 938 aa12.74□□□□□ -0.37
CPSF3-202ENST00000460593 RBM46Q8TBY0 533 aaKnown RBP12.74□□□□□ -0.37
CPSF3-202ENST00000460593 BRIP1Q9BX63 1249 aa12.74□□□□□ -0.37
CPSF3-202ENST00000460593 BARHL2Q9NY43 387 aa12.74□□□□□ -0.37
CPSF3-202ENST00000460593 NOP53Q9NZM5 478 aaKnown RBP12.74□□□□□ -0.37
CPSF3-202ENST00000460593 CHORDC1Q9UHD1 332 aaPredicted RBP12.74□□□□□ -0.37
CPSF3-202ENST00000460593 RGS16O15492 202 aaPredicted RBP12.74□□□□□ -0.37
CPSF3-202ENST00000460593 NONOQ15233 471 aaKnown RBP eCLIP12.74□□□□□ -0.37
CPSF3-202ENST00000460593 SOGA3Q5TF21 947 aa12.74□□□□□ -0.37
CPSF3-202ENST00000460593 ANKRD42Q8N9B4 389 aa12.74□□□□□ -0.37
CPSF3-202ENST00000460593 GDAP1Q8TB36 358 aa12.74□□□□□ -0.37
CPSF3-202ENST00000460593 U2AF1L4Q8WU68 220 aaKnown RBP12.74□□□□□ -0.37
CPSF3-202ENST00000460593 UBA5Q9GZZ9 404 aa12.74□□□□□ -0.37
CPSF3-202ENST00000460593 ZMYND12Q9H0C1 365 aa12.74□□□□□ -0.37
CPSF3-202ENST00000460593 CUEDC2Q9H467 287 aa12.74□□□□□ -0.37
CPSF3-202ENST00000460593 TFCP2L1Q9NZI6 479 aa12.74□□□□□ -0.37
CPSF3-202ENST00000460593 NAGPAQ9UK23 515 aa12.74□□□□□ -0.37
CPSF3-202ENST00000460593 SMNDC1O75940 238 aaKnown RBP eCLIP12.73□□□□□ -0.37
CPSF3-202ENST00000460593 MECOMQ03112 1051 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 COASYQ13057 564 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 C11orf91Q3C1V1 193 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 USP17L2Q6R6M4 530 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 IRF2BP2Q7Z5L9 587 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 KLHL29Q96CT2 875 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 IQCDQ96DY2 449 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 PBKQ96KB5 322 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 ZCWPW1Q9H0M4 648 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 GANQ9H2C0 597 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 BCAS3Q9H6U6 928 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 KCNMB3Q9NPA1 279 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 PRDM11Q9NQV5 511 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 TMOD4Q9NZQ9 345 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 PMS2P54278 862 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 FKBP3Q00688 224 aaKnown RBP12.73□□□□□ -0.37
CPSF3-202ENST00000460593 LRRC63Q05C16 580 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 KCNH2Q12809 1159 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 DCAF12L1Q5VU92 463 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 NEK8Q86SG6 692 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 CCDC25Q86WR0 208 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 SAAL1Q96ER3 474 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 SLC5A4Q9NY91 659 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 PPP1R9AQ9ULJ8 1098 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 TCP11X1B4DZS4 312 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 LINGO3P0C6S8 592 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 KRT13P13646 458 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 PRPHP41219 470 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 DCAF17Q5H9S7 520 aaPredicted RBP12.73□□□□□ -0.37
CPSF3-202ENST00000460593 SPTY2D1Q68D10 685 aaPredicted RBP12.73□□□□□ -0.37
CPSF3-202ENST00000460593 SEPT14Q6ZU15 432 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 ARMC9Q7Z3E5 817 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 ACSBG1Q96GR2 724 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 PLCD4Q9BRC7 762 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 SPATS2LQ9NUQ6 558 aaKnown RBP12.73□□□□□ -0.37
CPSF3-202ENST00000460593 DNAJC17Q9NVM6 304 aaKnown RBP12.73□□□□□ -0.37
CPSF3-202ENST00000460593 ZMYND8Q9ULU4 1186 aaPredicted RBP12.73□□□□□ -0.37
CPSF3-202ENST00000460593 KIF13AQ9H1H9 1805 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 COL4A1P02462 1669 aa12.73□□□□□ -0.37
CPSF3-202ENST00000460593 AFF2P51816 1311 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 FGFR1OPO95684 399 aaKnown RBP12.72□□□□□ -0.37
CPSF3-202ENST00000460593 FGRP09769 529 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 MMP13P45452 471 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 TUBP50607 506 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 TNIP1Q15025 636 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 CALCRLQ16602 461 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 GNPTABQ3T906 1256 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 DENND2CQ68D51 928 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 CCDC26Q8TAB7 109 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 DYDC1Q8WWB3 177 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 AK8Q96MA6 479 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 CNOT10Q9H9A5 744 aaKnown RBP12.72□□□□□ -0.37
CPSF3-202ENST00000460593 NKX1-2Q9UD57 310 aaPredicted RBP12.72□□□□□ -0.37
CPSF3-202ENST00000460593 SLIT2O94813 1529 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 IGSF9BQ9UPX0 1349 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 ALS2Q96Q42 1657 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 KLRF2D3W0D1 207 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 E9PMD0 336 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 PPFIA2O75334 1257 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 PDHA1P08559 390 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 ZNF268Q14587 947 aaPredicted RBP12.72□□□□□ -0.37
CPSF3-202ENST00000460593 ANKRD20A2Q5SQ80 823 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms