RNA–Protein interactions for RNA: ENST00000415298.5

AP1S3-205, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 1 (best)

Gene AP1S3, Length 2,515 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-205ENST00000415298 FLOT1O75955 427 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 SLC3A2P08195 630 aaKnown RBP22.23■■□□□ 1.15
AP1S3-205ENST00000415298 ATP1A3P13637 1013 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 PNMA8AQ86V59 439 aaPredicted RBP22.23■■□□□ 1.15
AP1S3-205ENST00000415298 SLC35F6Q8N357 371 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 CCT6BQ92526 530 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 BRF1Q92994 677 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 KRT23Q9C075 422 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 DHX36Q9H2U1 1008 aaKnown RBP22.23■■□□□ 1.15
AP1S3-205ENST00000415298 CNNM2Q9H8M5 875 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 PI4KBQ9UBF8 816 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 SIPA1L1O43166 1804 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 CFAP73A6NFT4 308 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 NNTQ13423 1086 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 SHROOM1Q2M3G4 852 aaPredicted RBP22.23■■□□□ 1.15
AP1S3-205ENST00000415298 MIGA2Q7L4E1 593 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 TC2NQ8N9U0 490 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 PANK4Q9NVE7 773 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 PGAP2Q9UHJ9 254 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 ROBO3Q96MS0 1386 aa22.23■■□□□ 1.15
AP1S3-205ENST00000415298 HLA-DOAP06340 250 aa22.22■■□□□ 1.15
AP1S3-205ENST00000415298 RASA1P20936 1047 aa22.22■■□□□ 1.15
AP1S3-205ENST00000415298 EPHX2P34913 555 aa22.22■■□□□ 1.15
AP1S3-205ENST00000415298 ZNF394Q53GI3 561 aa22.22■■□□□ 1.15
AP1S3-205ENST00000415298 FKBP1CQ5VVH2 108 aa22.22■■□□□ 1.15
AP1S3-205ENST00000415298 NANOGNBQ7Z5D8 188 aa22.22■■□□□ 1.15
AP1S3-205ENST00000415298 DEFB129Q9H1M3 183 aa22.22■■□□□ 1.15
AP1S3-205ENST00000415298 TMED5Q9Y3A6 229 aa22.22■■□□□ 1.15
AP1S3-205ENST00000415298 GSPT2Q8IYD1 628 aaKnown RBP22.22■■□□□ 1.15
AP1S3-205ENST00000415298 ESR2Q92731 530 aa22.22■■□□□ 1.15
AP1S3-205ENST00000415298 VCX3BQ9H321 246 aa22.22■■□□□ 1.15
AP1S3-205ENST00000415298 VCX3AQ9NNX9 186 aa22.22■■□□□ 1.15
AP1S3-205ENST00000415298 EIF4E1BA6NMX2 242 aaKnown RBP22.21■■□□□ 1.15
AP1S3-205ENST00000415298 ORC4O43929 436 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 ATP2C2O75185 946 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 BCRP11274 1271 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 TFAP4Q01664 338 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 NCAPH2Q6IBW4 605 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 FAM83AQ86UY5 434 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 IGDCC4Q8TDY8 1250 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 PPP2R3CQ969Q6 453 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 TUBA8Q9NY65 449 aaPredicted RBP22.21■■□□□ 1.15
AP1S3-205ENST00000415298 ADGRG1Q9Y653 693 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 ATRNL1Q5VV63 1379 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 DCAF8L1A6NGE4 600 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 SHMT1P34896 483 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 AMPD2Q01433 879 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 PPP4R3AQ6IN85 833 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 CEP128Q6ZU80 1094 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 CACNA2D3Q8IZS8 1091 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 CRACR2BQ8N4Y2 399 aaPredicted RBP22.21■■□□□ 1.15
AP1S3-205ENST00000415298 SH2D3CQ8N5H7 860 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 PDILTQ8N807 584 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 TRIML1Q8N9V2 468 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 TEPSINQ96N21 525 aa22.21■■□□□ 1.15
AP1S3-205ENST00000415298 TSPY2A6NKD2 308 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 GSTA1P08263 222 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 POTEIP0CG38 1075 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 POTEJP0CG39 1038 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 HOXD12P35452 270 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 NLRP5P59047 1200 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 SND1Q7KZF4 910 aaKnown RBP eCLIP22.2■■□□□ 1.14
AP1S3-205ENST00000415298 EXOC3L1Q86VI1 746 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 ZNF444Q8N0Y2 327 aaPredicted RBP22.2■■□□□ 1.14
AP1S3-205ENST00000415298 TAF4BQ92750 862 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 SEC16BQ96JE7 1060 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 KIAA1468Q9P260 1216 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 CROTQ9UKG9 612 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 USO1O60763 962 aaKnown RBP22.2■■□□□ 1.14
AP1S3-205ENST00000415298 HSF2BPO75031 334 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 SP100P23497 879 aaPredicted RBP22.2■■□□□ 1.14
AP1S3-205ENST00000415298 SMUG1Q53HV7 270 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 EAPPQ56P03 285 aaPredicted RBP22.2■■□□□ 1.14
AP1S3-205ENST00000415298 RAB11FIP4Q86YS3 637 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 RPGRIP1Q96KN7 1286 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 FTOQ9C0B1 505 aaKnown RBP eCLIP22.2■■□□□ 1.14
AP1S3-205ENST00000415298 HSD3B7Q9H2F3 369 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 FZD1Q9UP38 647 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 SH3GLB1Q9Y371 365 aa22.2■■□□□ 1.14
AP1S3-205ENST00000415298 VDRP11473 427 aa22.19■■□□□ 1.14
AP1S3-205ENST00000415298 RRP1BQ14684 758 aaKnown RBP22.19■■□□□ 1.14
AP1S3-205ENST00000415298 SEPT2Q15019 361 aa22.19■■□□□ 1.14
AP1S3-205ENST00000415298 ZNF653Q96CK0 615 aa22.19■■□□□ 1.14
AP1S3-205ENST00000415298 DDX27Q96GQ7 796 aaKnown RBP22.19■■□□□ 1.14
AP1S3-205ENST00000415298 TAF1DQ9H5J8 278 aaPredicted RBP22.19■■□□□ 1.14
AP1S3-205ENST00000415298 IL17RBQ9NRM6 502 aa22.19■■□□□ 1.14
AP1S3-205ENST00000415298 DDX25Q9UHL0 483 aaKnown RBP22.19■■□□□ 1.14
AP1S3-205ENST00000415298 IFIT3O14879 490 aaKnown RBP22.19■■□□□ 1.14
AP1S3-205ENST00000415298 LSM1O15116 133 aaKnown RBP22.19■■□□□ 1.14
AP1S3-205ENST00000415298 TIMM44O43615 452 aa22.19■■□□□ 1.14
AP1S3-205ENST00000415298 ATP2A2P16615 1042 aaKnown RBP22.19■■□□□ 1.14
AP1S3-205ENST00000415298 TRIM21P19474 475 aaKnown RBP22.19■■□□□ 1.14
AP1S3-205ENST00000415298 NR1D1P20393 614 aa22.19■■□□□ 1.14
AP1S3-205ENST00000415298 NBPF12Q5TAG4 269 aaPredicted RBP22.19■■□□□ 1.14
AP1S3-205ENST00000415298 IFT43Q96FT9 208 aa22.19■■□□□ 1.14
AP1S3-205ENST00000415298 C8orf76Q96K31 380 aa22.19■■□□□ 1.14
AP1S3-205ENST00000415298 RRAGCQ9HB90 399 aa22.19■■□□□ 1.14
AP1S3-205ENST00000415298 GMNCA6NCL1 334 aa22.18■■□□□ 1.14
AP1S3-205ENST00000415298 LGR5O75473 907 aa22.18■■□□□ 1.14
AP1S3-205ENST00000415298 NLRP12P59046 1061 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms