RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 GPR153Q6NV75 609 aa23.4■■□□□ 1.34
VSX1-204ENST00000409958 RUFY4Q6ZNE9 571 aa23.4■■□□□ 1.34
VSX1-204ENST00000409958 OTOP2Q7RTS6 562 aa23.4■■□□□ 1.34
VSX1-204ENST00000409958 CKAP2LQ8IYA6 745 aa23.4■■□□□ 1.34
VSX1-204ENST00000409958 BBXQ8WY36 941 aaPredicted RBP23.4■■□□□ 1.34
VSX1-204ENST00000409958 FAM167AQ96KS9 214 aa23.4■■□□□ 1.34
VSX1-204ENST00000409958 FTOQ9C0B1 505 aaKnown RBP eCLIP23.4■■□□□ 1.34
VSX1-204ENST00000409958 VAV3Q9UKW4 847 aa23.4■■□□□ 1.34
VSX1-204ENST00000409958 SZT2Q5T011 3432 aa23.4■■□□□ 1.34
VSX1-204ENST00000409958 TET1Q8NFU7 2136 aa23.4■■□□□ 1.34
VSX1-204ENST00000409958 MARCH6O60337 910 aa23.39■■□□□ 1.34
VSX1-204ENST00000409958 NBNO60934 754 aa23.39■■□□□ 1.34
VSX1-204ENST00000409958 BAG4O95429 457 aaKnown RBP23.39■■□□□ 1.34
VSX1-204ENST00000409958 RPLP2P05387 115 aaKnown RBP23.39■■□□□ 1.34
VSX1-204ENST00000409958 ACTN1P12814 892 aa23.39■■□□□ 1.34
VSX1-204ENST00000409958 GJB2P29033 226 aa23.39■■□□□ 1.34
VSX1-204ENST00000409958 GNL2Q13823 731 aaKnown RBP23.39■■□□□ 1.34
VSX1-204ENST00000409958 MBTPS1Q14703 1052 aa23.39■■□□□ 1.34
VSX1-204ENST00000409958 ZNF484Q5JVG2 852 aa23.39■■□□□ 1.34
VSX1-204ENST00000409958 RSPH3Q86UC2 560 aa23.39■■□□□ 1.34
VSX1-204ENST00000409958 SLFN12Q8IYM2 578 aa23.39■■□□□ 1.34
VSX1-204ENST00000409958 SMC3Q9UQE7 1217 aa23.39■■□□□ 1.34
VSX1-204ENST00000409958 PCDHA2Q9Y5H9 948 aa23.39■■□□□ 1.34
VSX1-204ENST00000409958 SMAD3P84022 425 aaKnown RBP23.38■■□□□ 1.33
VSX1-204ENST00000409958 FAM26DQ5JW98 314 aa23.38■■□□□ 1.33
VSX1-204ENST00000409958 NOSTRINQ8IVI9 506 aa23.38■■□□□ 1.33
VSX1-204ENST00000409958 TRAPPC12Q8WVT3 735 aa23.38■■□□□ 1.33
VSX1-204ENST00000409958 CXXC1Q9P0U4 656 aaPredicted RBP23.38■■□□□ 1.33
VSX1-204ENST00000409958 WDR81Q562E7 1941 aa23.38■■□□□ 1.33
VSX1-204ENST00000409958 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.37■■□□□ 1.33
VSX1-204ENST00000409958 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.37■■□□□ 1.33
VSX1-204ENST00000409958 WNT7AO00755 349 aa23.37■■□□□ 1.33
VSX1-204ENST00000409958 ZNF862O60290 1169 aa23.37■■□□□ 1.33
VSX1-204ENST00000409958 NEMFO60524 1076 aa23.37■■□□□ 1.33
VSX1-204ENST00000409958 U2AF2P26368 475 aaKnown RBP eCLIP23.37■■□□□ 1.33
VSX1-204ENST00000409958 CUL4AQ13619 759 aa23.37■■□□□ 1.33
VSX1-204ENST00000409958 MTHFD1LQ6UB35 978 aa23.37■■□□□ 1.33
VSX1-204ENST00000409958 CEP131Q9UPN4 1083 aa23.37■■□□□ 1.33
VSX1-204ENST00000409958 LAMA2P24043 3122 aaKnown RBP23.37■■□□□ 1.33
VSX1-204ENST00000409958 ZBTB42B2RXF5 422 aa23.36■■□□□ 1.33
VSX1-204ENST00000409958 KIF28PB7ZC32 967 aa23.36■■□□□ 1.33
VSX1-204ENST00000409958 OATP04181 439 aa23.36■■□□□ 1.33
VSX1-204ENST00000409958 CTSHP09668 335 aa23.36■■□□□ 1.33
VSX1-204ENST00000409958 KLRC1P26715 233 aa23.36■■□□□ 1.33
VSX1-204ENST00000409958 PRKCEQ02156 737 aa23.36■■□□□ 1.33
VSX1-204ENST00000409958 CALCRLQ16602 461 aa23.36■■□□□ 1.33
VSX1-204ENST00000409958 UGCGQ16739 394 aa23.36■■□□□ 1.33
VSX1-204ENST00000409958 CNKSR3Q6P9H4 555 aa23.36■■□□□ 1.33
VSX1-204ENST00000409958 DNAJB3Q8WWF6 145 aa23.36■■□□□ 1.33
VSX1-204ENST00000409958 ZBTB10Q96DT7 871 aa23.36■■□□□ 1.33
VSX1-204ENST00000409958 NRBP2Q9NSY0 501 aa23.36■■□□□ 1.33
VSX1-204ENST00000409958 SMIM35A0A1B0GVV1 85 aa23.35■■□□□ 1.33
VSX1-204ENST00000409958 EML1O00423 815 aa23.35■■□□□ 1.33
VSX1-204ENST00000409958 BAIAP3O94812 1187 aa23.35■■□□□ 1.33
VSX1-204ENST00000409958 ATP2B1P20020 1258 aa23.35■■□□□ 1.33
VSX1-204ENST00000409958 TRAPPC10P48553 1259 aa23.35■■□□□ 1.33
VSX1-204ENST00000409958 ORC2Q13416 577 aaPredicted RBP23.35■■□□□ 1.33
VSX1-204ENST00000409958 SLC4A7Q9Y6M7 1214 aa23.35■■□□□ 1.33
VSX1-204ENST00000409958 ZBBXA8MT70 800 aa23.34■■□□□ 1.33
VSX1-204ENST00000409958 RBAK-RBAKDNI3L0D1 243 aa23.34■■□□□ 1.33
VSX1-204ENST00000409958 SPIRE1Q08AE8 756 aa23.34■■□□□ 1.33
VSX1-204ENST00000409958 MGAT3Q09327 533 aa23.34■■□□□ 1.33
VSX1-204ENST00000409958 Q7L0L9 218 aa23.34■■□□□ 1.33
VSX1-204ENST00000409958 TRMT1LQ7Z2T5 733 aaKnown RBP23.34■■□□□ 1.33
VSX1-204ENST00000409958 MTMR9Q96QG7 549 aa23.34■■□□□ 1.33
VSX1-204ENST00000409958 FAM49AQ9H0Q0 323 aaPredicted RBP23.34■■□□□ 1.33
VSX1-204ENST00000409958 NOL7Q9UMY1 257 aaKnown RBP23.34■■□□□ 1.33
VSX1-204ENST00000409958 CHRNA1P02708 482 aa23.33■■□□□ 1.33
VSX1-204ENST00000409958 MCM7P33993 719 aa23.33■■□□□ 1.33
VSX1-204ENST00000409958 PSMC5P62195 406 aa23.33■■□□□ 1.33
VSX1-204ENST00000409958 EPHA7Q15375 998 aa23.33■■□□□ 1.33
VSX1-204ENST00000409958 FAM109BQ6ICB4 259 aaPredicted RBP23.33■■□□□ 1.33
VSX1-204ENST00000409958 NME8Q8N427 588 aa23.33■■□□□ 1.33
VSX1-204ENST00000409958 PCDHA12Q9UN75 941 aa23.33■■□□□ 1.33
VSX1-204ENST00000409958 H3BQV1 296 aa23.33■■□□□ 1.32
VSX1-204ENST00000409958 MAGEB2O15479 319 aa23.33■■□□□ 1.32
VSX1-204ENST00000409958 DKC1O60832 514 aaKnown RBP eCLIP23.33■■□□□ 1.32
VSX1-204ENST00000409958 C22orf31O95567 290 aa23.33■■□□□ 1.32
VSX1-204ENST00000409958 P4HBP07237 508 aaKnown RBP23.33■■□□□ 1.32
VSX1-204ENST00000409958 QARSP47897 775 aaKnown RBP23.33■■□□□ 1.32
VSX1-204ENST00000409958 MRPS6P82932 125 aaKnown RBP23.33■■□□□ 1.32
VSX1-204ENST00000409958 PLEKHG4Q58EX7 1191 aa23.33■■□□□ 1.32
VSX1-204ENST00000409958 XKR3Q5GH77 459 aa23.33■■□□□ 1.32
VSX1-204ENST00000409958 TTC38Q5R3I4 469 aa23.33■■□□□ 1.32
VSX1-204ENST00000409958 IER5Q5VY09 327 aa23.33■■□□□ 1.32
VSX1-204ENST00000409958 NCAPH2Q6IBW4 605 aa23.33■■□□□ 1.32
VSX1-204ENST00000409958 TMEM60Q9H2L4 133 aa23.33■■□□□ 1.32
VSX1-204ENST00000409958 TTC12Q9H892 705 aaPredicted RBP23.33■■□□□ 1.32
VSX1-204ENST00000409958 ABHD14A-ACY1A0A1B0GW23 586 aa23.32■■□□□ 1.32
VSX1-204ENST00000409958 EFCAB14O75071 495 aa23.32■■□□□ 1.32
VSX1-204ENST00000409958 STBD1O95210 358 aa23.32■■□□□ 1.32
VSX1-204ENST00000409958 ZNF174Q15697 407 aa23.32■■□□□ 1.32
VSX1-204ENST00000409958 BANK1Q8NDB2 785 aa23.32■■□□□ 1.32
VSX1-204ENST00000409958 NIFKQ9BYG3 293 aaKnown RBP23.32■■□□□ 1.32
VSX1-204ENST00000409958 CDY2AQ9Y6F7 541 aa23.32■■□□□ 1.32
VSX1-204ENST00000409958 GRXCR1A8MXD5 290 aa23.31■■□□□ 1.32
VSX1-204ENST00000409958 K7ELQ4 463 aaPredicted RBP23.31■■□□□ 1.32
VSX1-204ENST00000409958 M0QZ92 97 aa23.31■■□□□ 1.32
VSX1-204ENST00000409958 ATP2A2P16615 1042 aaKnown RBP23.31■■□□□ 1.32
VSX1-204ENST00000409958 TXKP42681 527 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms