RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 TMEM260Q9NX78 707 aa10.93□□□□□ -0.66
NEDD9-203ENST00000397378 FANCMQ8IYD8 2048 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 OTOGLQ3ZCN5 2332 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 LGALS2P05162 132 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 PARP1P09874 1014 aaKnown RBP10.92□□□□□ -0.66
NEDD9-203ENST00000397378 WEE2P0C1S8 567 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 STAG3L1P0CL83 205 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 MYCLP12524 364 aaPredicted RBP10.92□□□□□ -0.66
NEDD9-203ENST00000397378 MTHFRP42898 656 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 ADAM17P78536 824 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 ARHGAP4P98171 946 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 ITIH3Q06033 890 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 APOBRQ0VD83 1088 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 COL9A3Q14050 684 aaPredicted RBP10.92□□□□□ -0.66
NEDD9-203ENST00000397378 PGM5Q15124 567 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 SPECC1Q5M775 1068 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 RASGRP4Q8TDF6 673 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 CASP10Q92851 521 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 MTMR8Q96EF0 704 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 AMNQ9BXJ7 453 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 USP26Q9BXU7 913 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 ADAM7Q9H2U9 754 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 KAT14Q9H8E8 782 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 EHMT1Q9H9B1 1298 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 MLXIPQ9HAP2 919 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 ENTPD7Q9NQZ7 604 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 AAASQ9NRG9 546 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 RNF216Q9NWF9 866 aaPredicted RBP10.92□□□□□ -0.66
NEDD9-203ENST00000397378 DAXXQ9UER7 740 aaPredicted RBP10.92□□□□□ -0.66
NEDD9-203ENST00000397378 DBR1Q9UK59 544 aaKnown RBP10.92□□□□□ -0.66
NEDD9-203ENST00000397378 LRFN2Q9ULH4 789 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 SUPT16HQ9Y5B9 1047 aaKnown RBP10.92□□□□□ -0.66
NEDD9-203ENST00000397378 PCDHB15Q9Y5E8 787 aa10.92□□□□□ -0.66
NEDD9-203ENST00000397378 NOP56O00567 594 aaKnown RBP10.91□□□□□ -0.66
NEDD9-203ENST00000397378 DHX16O60231 1041 aaKnown RBP10.91□□□□□ -0.66
NEDD9-203ENST00000397378 KINO60870 393 aaKnown RBP10.91□□□□□ -0.66
NEDD9-203ENST00000397378 SP9P0CG40 484 aa10.91□□□□□ -0.66
NEDD9-203ENST00000397378 CCND2P30279 289 aa10.91□□□□□ -0.66
NEDD9-203ENST00000397378 PDE1AP54750 535 aa10.91□□□□□ -0.66
NEDD9-203ENST00000397378 MFAP1P55081 439 aaKnown RBP10.91□□□□□ -0.66
NEDD9-203ENST00000397378 GPR161Q8N6U8 529 aaKnown RBP10.91□□□□□ -0.66
NEDD9-203ENST00000397378 ENAHQ8N8S7 591 aaPredicted RBP10.91□□□□□ -0.66
NEDD9-203ENST00000397378 SUMF1Q8NBK3 374 aa10.91□□□□□ -0.66
NEDD9-203ENST00000397378 IL31RAQ8NI17 732 aa10.91□□□□□ -0.66
NEDD9-203ENST00000397378 LINC01599Q8WXQ3 324 aa10.91□□□□□ -0.66
NEDD9-203ENST00000397378 TCF25Q9BQ70 676 aa10.91□□□□□ -0.66
NEDD9-203ENST00000397378 RTKNQ9BST9 563 aa10.91□□□□□ -0.66
NEDD9-203ENST00000397378 VAT1LQ9HCJ6 419 aa10.91□□□□□ -0.66
NEDD9-203ENST00000397378 DUSP12Q9UNI6 340 aa10.91□□□□□ -0.66
NEDD9-203ENST00000397378 PRR5-ARHGAP8B1AHC4 643 aa10.9□□□□□ -0.66
NEDD9-203ENST00000397378 ZNF213O14771 459 aa10.9□□□□□ -0.66
NEDD9-203ENST00000397378 FSCN2O14926 492 aa10.9□□□□□ -0.66
NEDD9-203ENST00000397378 CD52P31358 61 aa10.9□□□□□ -0.66
NEDD9-203ENST00000397378 ARHGAP8P85298 464 aa10.9□□□□□ -0.66
NEDD9-203ENST00000397378 LMNB2Q03252 620 aa10.9□□□□□ -0.66
NEDD9-203ENST00000397378 NMIQ13287 307 aaPredicted RBP10.9□□□□□ -0.66
NEDD9-203ENST00000397378 TDGQ13569 410 aa10.9□□□□□ -0.66
NEDD9-203ENST00000397378 VARS2Q5ST30 1063 aaKnown RBP10.9□□□□□ -0.66
NEDD9-203ENST00000397378 RARS2Q5T160 578 aaKnown RBP10.9□□□□□ -0.66
NEDD9-203ENST00000397378 TSHZ1Q6ZSZ6 1077 aa10.9□□□□□ -0.66
NEDD9-203ENST00000397378 RSPH3Q86UC2 560 aa10.9□□□□□ -0.66
NEDD9-203ENST00000397378 LMBR1Q8WVP7 490 aa10.9□□□□□ -0.66
NEDD9-203ENST00000397378 GPKOWQ92917 476 aaPredicted RBP eCLIP10.9□□□□□ -0.66
NEDD9-203ENST00000397378 ZSCAN10Q96SZ4 725 aaPredicted RBP10.9□□□□□ -0.66
NEDD9-203ENST00000397378 CYP26B1Q9NR63 512 aa10.9□□□□□ -0.66
NEDD9-203ENST00000397378 PCDHA1Q9Y5I3 950 aa10.9□□□□□ -0.66
NEDD9-203ENST00000397378 HCFC2Q9Y5Z7 792 aa10.9□□□□□ -0.66
NEDD9-203ENST00000397378 HIDE1A8MVS5 230 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 B4E1Z4 1266 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 ZBTB5O15062 677 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 PPP1R11O60927 126 aaPredicted RBP10.89□□□□□ -0.67
NEDD9-203ENST00000397378 STAM2O75886 525 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 EOMESO95936 686 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 CFHP08603 1231 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 SCG2P13521 617 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 HOXA13P31271 388 aaPredicted RBP10.89□□□□□ -0.67
NEDD9-203ENST00000397378 MGAT3Q09327 533 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 TBC1D8BQ0IIM8 1120 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 TRAF1Q13077 416 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 NEDD9Q14511 834 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 GNPTABQ3T906 1256 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 PPM1JQ5JR12 505 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 FBXO47Q5MNV8 452 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 METTL7BQ6UX53 244 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 RUFY4Q6ZNE9 571 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 CRIPAKQ8N1N5 446 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 STAG2Q8N3U4 1231 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 SECISBP2LQ93073 1101 aaKnown RBP10.89□□□□□ -0.67
NEDD9-203ENST00000397378 INPP4AQ96PE3 977 aaPredicted RBP10.89□□□□□ -0.67
NEDD9-203ENST00000397378 GPR20Q99678 358 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 FTHL17Q9BXU8 183 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 BCAS3Q9H6U6 928 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 AGO3Q9H9G7 860 aaKnown RBP10.89□□□□□ -0.67
NEDD9-203ENST00000397378 ZSWIM5Q9P217 1185 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 ZBTB47Q9UFB7 747 aaPredicted RBP10.89□□□□□ -0.67
NEDD9-203ENST00000397378 PUF60Q9UHX1 559 aaKnown RBP10.89□□□□□ -0.67
NEDD9-203ENST00000397378 ZNF215Q9UL58 517 aaPredicted RBP10.89□□□□□ -0.67
NEDD9-203ENST00000397378 USP18Q9UMW8 372 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 USTQ9Y2C2 406 aa10.89□□□□□ -0.67
NEDD9-203ENST00000397378 CDY2AQ9Y6F7 541 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms