RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 USP28Q96RU2 1077 aa21.04■□□□□ 0.96
SSU72-203ENST00000378725 FTOQ9C0B1 505 aaKnown RBP eCLIP21.04■□□□□ 0.96
SSU72-203ENST00000378725 MBLAC1A4D2B0 266 aaPredicted RBP21.03■□□□□ 0.96
SSU72-203ENST00000378725 ZBTB42B2RXF5 422 aa21.03■□□□□ 0.96
SSU72-203ENST00000378725 LYPLA2O95372 231 aa21.03■□□□□ 0.96
SSU72-203ENST00000378725 OATP04181 439 aa21.03■□□□□ 0.96
SSU72-203ENST00000378725 PRKCEQ02156 737 aa21.03■□□□□ 0.96
SSU72-203ENST00000378725 PTK7Q13308 1070 aa21.03■□□□□ 0.96
SSU72-203ENST00000378725 XKR3Q5GH77 459 aa21.03■□□□□ 0.96
SSU72-203ENST00000378725 SERINC5Q86VE9 423 aa21.03■□□□□ 0.96
SSU72-203ENST00000378725 ZNF396Q96N95 335 aaPredicted RBP21.03■□□□□ 0.96
SSU72-203ENST00000378725 POLR3CQ9BUI4 534 aaPredicted RBP21.03■□□□□ 0.96
SSU72-203ENST00000378725 NIFKQ9BYG3 293 aaKnown RBP21.03■□□□□ 0.96
SSU72-203ENST00000378725 RAB34Q9BZG1 259 aa21.03■□□□□ 0.96
SSU72-203ENST00000378725 ZSWIM4Q9H7M6 989 aa21.03■□□□□ 0.96
SSU72-203ENST00000378725 TSHZ2Q9NRE2 1034 aa21.03■□□□□ 0.96
SSU72-203ENST00000378725 WRAP73Q9P2S5 460 aaPredicted RBP21.03■□□□□ 0.96
SSU72-203ENST00000378725 COL1A2P08123 1366 aa21.02■□□□□ 0.96
SSU72-203ENST00000378725 TREHO43280 583 aa21.02■□□□□ 0.96
SSU72-203ENST00000378725 SPATA31C1P0DKV0 1188 aa21.02■□□□□ 0.96
SSU72-203ENST00000378725 CYP2C9P11712 490 aa21.02■□□□□ 0.96
SSU72-203ENST00000378725 NASPP49321 788 aaPredicted RBP21.02■□□□□ 0.96
SSU72-203ENST00000378725 CTTNQ14247 550 aaKnown RBP21.02■□□□□ 0.96
SSU72-203ENST00000378725 SLC39A14Q15043 492 aa21.02■□□□□ 0.96
SSU72-203ENST00000378725 ATL3Q6DD88 541 aa21.02■□□□□ 0.96
SSU72-203ENST00000378725 LXNQ9BS40 222 aa21.02■□□□□ 0.96
SSU72-203ENST00000378725 TUFT1Q9NNX1 390 aa21.02■□□□□ 0.96
SSU72-203ENST00000378725 LRWD1Q9UFC0 647 aa21.02■□□□□ 0.96
SSU72-203ENST00000378725 NOD1Q9Y239 953 aa21.02■□□□□ 0.96
SSU72-203ENST00000378725 RBM19Q9Y4C8 960 aaKnown RBP21.02■□□□□ 0.96
SSU72-203ENST00000378725 STK24Q9Y6E0 443 aa21.02■□□□□ 0.96
SSU72-203ENST00000378725 TIMP1P01033 207 aa21.01■□□□□ 0.95
SSU72-203ENST00000378725 ITGB8P26012 769 aa21.01■□□□□ 0.95
SSU72-203ENST00000378725 RPA1P27694 616 aa21.01■□□□□ 0.95
SSU72-203ENST00000378725 TARBP2Q15633 366 aaKnown RBP21.01■□□□□ 0.95
SSU72-203ENST00000378725 CATSPER3Q86XQ3 398 aa21.01■□□□□ 0.95
SSU72-203ENST00000378725 TPH2Q8IWU9 490 aa21.01■□□□□ 0.95
SSU72-203ENST00000378725 ERMNQ8TAM6 284 aa21.01■□□□□ 0.95
SSU72-203ENST00000378725 DHX38Q92620 1227 aaKnown RBP21.01■□□□□ 0.95
SSU72-203ENST00000378725 NOC4LQ9BVI4 516 aaKnown RBP21.01■□□□□ 0.95
SSU72-203ENST00000378725 PRDM5Q9NQX1 630 aaPredicted RBP21.01■□□□□ 0.95
SSU72-203ENST00000378725 PRKAG2Q9UGJ0 569 aa21.01■□□□□ 0.95
SSU72-203ENST00000378725 ZMYND8Q9ULU4 1186 aaPredicted RBP21.01■□□□□ 0.95
SSU72-203ENST00000378725 VWA3AA6NCI4 1184 aa21■□□□□ 0.95
SSU72-203ENST00000378725 DDX11L8A8MPP1 907 aa21■□□□□ 0.95
SSU72-203ENST00000378725 MED24O75448 989 aa21■□□□□ 0.95
SSU72-203ENST00000378725 SYN1P17600 705 aa21■□□□□ 0.95
SSU72-203ENST00000378725 MUTP22033 750 aa21■□□□□ 0.95
SSU72-203ENST00000378725 IGBP1P78318 339 aa21■□□□□ 0.95
SSU72-203ENST00000378725 NUCB2P80303 420 aa21■□□□□ 0.95
SSU72-203ENST00000378725 CYP4A11Q02928 519 aa21■□□□□ 0.95
SSU72-203ENST00000378725 RBL2Q08999 1139 aa21■□□□□ 0.95
SSU72-203ENST00000378725 TRIM71Q2Q1W2 868 aaKnown RBP21■□□□□ 0.95
SSU72-203ENST00000378725 MTHFD1LQ6UB35 978 aa21■□□□□ 0.95
SSU72-203ENST00000378725 ANO5Q75V66 913 aa21■□□□□ 0.95
SSU72-203ENST00000378725 TRMT1LQ7Z2T5 733 aaKnown RBP21■□□□□ 0.95
SSU72-203ENST00000378725 LINC00301Q8NCQ3 95 aa21■□□□□ 0.95
SSU72-203ENST00000378725 TRAPPC12Q8WVT3 735 aa21■□□□□ 0.95
SSU72-203ENST00000378725 CEP89Q96ST8 783 aa21■□□□□ 0.95
SSU72-203ENST00000378725 HIPK3Q9H422 1215 aa21■□□□□ 0.95
SSU72-203ENST00000378725 TFIP11Q9UBB9 837 aaKnown RBP21■□□□□ 0.95
SSU72-203ENST00000378725 DAXXQ9UER7 740 aaPredicted RBP21■□□□□ 0.95
SSU72-203ENST00000378725 TUBE1Q9UJT0 475 aa21■□□□□ 0.95
SSU72-203ENST00000378725 PCDHA2Q9Y5H9 948 aa21■□□□□ 0.95
SSU72-203ENST00000378725 H0YGN5 161 aa20.99■□□□□ 0.95
SSU72-203ENST00000378725 XRCC6P12956 609 aaKnown RBP eCLIP20.99■□□□□ 0.95
SSU72-203ENST00000378725 KLRC1P26715 233 aa20.99■□□□□ 0.95
SSU72-203ENST00000378725 CEBPZQ03701 1054 aaKnown RBP20.99■□□□□ 0.95
SSU72-203ENST00000378725 RPAINQ86UA6 219 aa20.99■□□□□ 0.95
SSU72-203ENST00000378725 CAGE1Q8TC20 777 aa20.99■□□□□ 0.95
SSU72-203ENST00000378725 WNT8BQ93098 351 aa20.99■□□□□ 0.95
SSU72-203ENST00000378725 AK8Q96MA6 479 aa20.99■□□□□ 0.95
SSU72-203ENST00000378725 SRPRBQ9Y5M8 271 aaKnown RBP20.99■□□□□ 0.95
SSU72-203ENST00000378725 PITPNM1O00562 1244 aa20.98■□□□□ 0.95
SSU72-203ENST00000378725 YEATS4O95619 227 aa20.98■□□□□ 0.95
SSU72-203ENST00000378725 RAG1P15918 1043 aa20.98■□□□□ 0.95
SSU72-203ENST00000378725 YWHABP31946 246 aaKnown RBP20.98■□□□□ 0.95
SSU72-203ENST00000378725 LONP1P36776 959 aaKnown RBP20.98■□□□□ 0.95
SSU72-203ENST00000378725 BFSP2Q13515 415 aa20.98■□□□□ 0.95
SSU72-203ENST00000378725 HAUS3Q68CZ6 603 aa20.98■□□□□ 0.95
SSU72-203ENST00000378725 TAF2Q6P1X5 1199 aa20.98■□□□□ 0.95
SSU72-203ENST00000378725 OTUD6AQ7L8S5 288 aa20.98■□□□□ 0.95
SSU72-203ENST00000378725 MMTAG2Q9BU76 263 aaKnown RBP20.98■□□□□ 0.95
SSU72-203ENST00000378725 FBXO2Q9UK22 296 aaPredicted RBP20.98■□□□□ 0.95
SSU72-203ENST00000378725 TMEM150BA6NC51 233 aa20.97■□□□□ 0.95
SSU72-203ENST00000378725 PP2D1A8MPX8 630 aa20.97■□□□□ 0.95
SSU72-203ENST00000378725 ZBTB39O15060 712 aa20.97■□□□□ 0.95
SSU72-203ENST00000378725 MAGEB2O15479 319 aa20.97■□□□□ 0.95
SSU72-203ENST00000378725 C22orf31O95567 290 aa20.97■□□□□ 0.95
SSU72-203ENST00000378725 MARCKSP29966 332 aaPredicted RBP20.97■□□□□ 0.95
SSU72-203ENST00000378725 CDC25AP30304 524 aa20.97■□□□□ 0.95
SSU72-203ENST00000378725 DNM1Q05193 864 aaKnown RBP20.97■□□□□ 0.95
SSU72-203ENST00000378725 GRIN1Q05586 938 aa20.97■□□□□ 0.95
SSU72-203ENST00000378725 KRT79Q5XKE5 535 aa20.97■□□□□ 0.95
SSU72-203ENST00000378725 MFSD5Q6N075 450 aa20.97■□□□□ 0.95
SSU72-203ENST00000378725 RUFY4Q6ZNE9 571 aa20.97■□□□□ 0.95
SSU72-203ENST00000378725 CCDC155Q8N6L0 562 aa20.97■□□□□ 0.95
SSU72-203ENST00000378725 ZBTB10Q96DT7 871 aa20.97■□□□□ 0.95
SSU72-203ENST00000378725 ANKEF1Q9NU02 776 aa20.97■□□□□ 0.95
SSU72-203ENST00000378725 SEPT9Q9UHD8 586 aaPredicted RBP20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms