RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 WDR81Q562E7 1941 aa24.84■■□□□ 1.57
SHMT1-203ENST00000354098 A0A087WWV3 80 aa24.84■■□□□ 1.57
SHMT1-203ENST00000354098 ZBTB39O15060 712 aa24.84■■□□□ 1.57
SHMT1-203ENST00000354098 PQBP1O60828 265 aaKnown RBP24.84■■□□□ 1.57
SHMT1-203ENST00000354098 PPP6R2O75170 966 aa24.84■■□□□ 1.57
SHMT1-203ENST00000354098 OATP04181 439 aa24.84■■□□□ 1.57
SHMT1-203ENST00000354098 INSRRP14616 1297 aa24.84■■□□□ 1.57
SHMT1-203ENST00000354098 LONP1P36776 959 aaKnown RBP24.84■■□□□ 1.57
SHMT1-203ENST00000354098 ECM1Q16610 540 aa24.84■■□□□ 1.57
SHMT1-203ENST00000354098 SESTD1Q86VW0 696 aa24.84■■□□□ 1.57
SHMT1-203ENST00000354098 KRI1Q8N9T8 703 aaKnown RBP24.84■■□□□ 1.57
SHMT1-203ENST00000354098 ERMNQ8TAM6 284 aa24.84■■□□□ 1.57
SHMT1-203ENST00000354098 SNX29Q8TEQ0 813 aa24.84■■□□□ 1.57
SHMT1-203ENST00000354098 TRPV6Q9H1D0 765 aa24.84■■□□□ 1.57
SHMT1-203ENST00000354098 ZSWIM4Q9H7M6 989 aa24.84■■□□□ 1.57
SHMT1-203ENST00000354098 TRMT13Q9NUP7 481 aaKnown RBP24.84■■□□□ 1.57
SHMT1-203ENST00000354098 RPA1P27694 616 aa24.83■■□□□ 1.57
SHMT1-203ENST00000354098 CCT6AP40227 531 aaKnown RBP24.83■■□□□ 1.57
SHMT1-203ENST00000354098 TLE2Q04725 743 aa24.83■■□□□ 1.57
SHMT1-203ENST00000354098 NEK9Q8TD19 979 aa24.83■■□□□ 1.57
SHMT1-203ENST00000354098 LEO1Q8WVC0 666 aaPredicted RBP24.83■■□□□ 1.57
SHMT1-203ENST00000354098 TRAPPC12Q8WVT3 735 aa24.83■■□□□ 1.57
SHMT1-203ENST00000354098 BBXQ8WY36 941 aaPredicted RBP24.83■■□□□ 1.57
SHMT1-203ENST00000354098 SH2D3AQ9BRG2 576 aa24.83■■□□□ 1.57
SHMT1-203ENST00000354098 POLR3CQ9BUI4 534 aaPredicted RBP24.83■■□□□ 1.57
SHMT1-203ENST00000354098 GDPD2Q9HCC8 539 aa24.83■■□□□ 1.57
SHMT1-203ENST00000354098 B4GALT4O60513 344 aa24.82■■□□□ 1.56
SHMT1-203ENST00000354098 IGBP1P78318 339 aa24.82■■□□□ 1.56
SHMT1-203ENST00000354098 PPFIA1Q13136 1202 aa24.82■■□□□ 1.56
SHMT1-203ENST00000354098 KRT79Q5XKE5 535 aa24.82■■□□□ 1.56
SHMT1-203ENST00000354098 USP49Q70CQ1 688 aa24.82■■□□□ 1.56
SHMT1-203ENST00000354098 ANO5Q75V66 913 aa24.82■■□□□ 1.56
SHMT1-203ENST00000354098 ANKRD33Q7Z3H0 272 aa24.82■■□□□ 1.56
SHMT1-203ENST00000354098 FAM126BQ8IXS8 530 aa24.82■■□□□ 1.56
SHMT1-203ENST00000354098 C4orf19Q8IY42 314 aa24.82■■□□□ 1.56
SHMT1-203ENST00000354098 KCNG4Q8TDN1 519 aa24.82■■□□□ 1.56
SHMT1-203ENST00000354098 LMBR1Q8WVP7 490 aa24.82■■□□□ 1.56
SHMT1-203ENST00000354098 AK8Q96MA6 479 aa24.82■■□□□ 1.56
SHMT1-203ENST00000354098 TUFT1Q9NNX1 390 aa24.82■■□□□ 1.56
SHMT1-203ENST00000354098 MYH9P35579 1960 aaKnown RBP24.82■■□□□ 1.56
SHMT1-203ENST00000354098 DDX11L8A8MPP1 907 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 ZBTB42B2RXF5 422 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 HBP1O60381 514 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 HOXC8P31273 242 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 PTPN11Q06124 597 aaPredicted RBP24.81■■□□□ 1.56
SHMT1-203ENST00000354098 GRIK4Q16099 956 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 XKR3Q5GH77 459 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 HAUS3Q68CZ6 603 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 POTEGQ6S5H5 508 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 TNPO1Q92973 898 aaKnown RBP24.81■■□□□ 1.56
SHMT1-203ENST00000354098 ZBTB10Q96DT7 871 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 EPSTI1Q96J88 318 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 SPATA32Q96LK8 384 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 CTAGE1Q96RT6 745 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 SEZ6LQ9BYH1 1024 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 NRBP2Q9NSY0 501 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 PCDHA7Q9UN72 937 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 NRCAMQ92823 1304 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 C17orf102A2RUQ5 167 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 MARCH8Q5T0T0 291 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 FAM167AQ96KS9 214 aa24.81■■□□□ 1.56
SHMT1-203ENST00000354098 SEPT9Q9UHD8 586 aaPredicted RBP24.81■■□□□ 1.56
SHMT1-203ENST00000354098 DKC1O60832 514 aaKnown RBP eCLIP24.8■■□□□ 1.56
SHMT1-203ENST00000354098 YWHABP31946 246 aaKnown RBP24.8■■□□□ 1.56
SHMT1-203ENST00000354098 ME1P48163 572 aa24.8■■□□□ 1.56
SHMT1-203ENST00000354098 ADAM17P78536 824 aa24.8■■□□□ 1.56
SHMT1-203ENST00000354098 ZRSR1Q15695 479 aaKnown RBP24.8■■□□□ 1.56
SHMT1-203ENST00000354098 PTGISQ16647 500 aa24.8■■□□□ 1.56
SHMT1-203ENST00000354098 AXDND1Q5T1B0 1012 aaPredicted RBP24.8■■□□□ 1.56
SHMT1-203ENST00000354098 PLA2G4FQ68DD2 849 aa24.8■■□□□ 1.56
SHMT1-203ENST00000354098 PIGOQ8TEQ8 1089 aa24.8■■□□□ 1.56
SHMT1-203ENST00000354098 HTATIP2Q9BUP3 242 aa24.8■■□□□ 1.56
SHMT1-203ENST00000354098 MROH7Q68CQ1 1323 aa24.79■■□□□ 1.56
SHMT1-203ENST00000354098 TREHO43280 583 aa24.79■■□□□ 1.56
SHMT1-203ENST00000354098 LYPLA2O95372 231 aa24.79■■□□□ 1.56
SHMT1-203ENST00000354098 CD4P01730 458 aa24.79■■□□□ 1.56
SHMT1-203ENST00000354098 RGS19P49795 217 aa24.79■■□□□ 1.56
SHMT1-203ENST00000354098 FAAP100Q0VG06 881 aa24.79■■□□□ 1.56
SHMT1-203ENST00000354098 CABP7Q86V35 215 aa24.79■■□□□ 1.56
SHMT1-203ENST00000354098 ZNF579Q8NAF0 562 aaKnown RBP24.79■■□□□ 1.56
SHMT1-203ENST00000354098 SYMPKQ92797 1274 aaKnown RBP24.79■■□□□ 1.56
SHMT1-203ENST00000354098 TOX2Q96NM4 488 aa24.79■■□□□ 1.56
SHMT1-203ENST00000354098 PLIN2Q99541 437 aa24.79■■□□□ 1.56
SHMT1-203ENST00000354098 NIFKQ9BYG3 293 aaKnown RBP24.79■■□□□ 1.56
SHMT1-203ENST00000354098 SCAND2PQ9GZW5 306 aaPredicted RBP24.79■■□□□ 1.56
SHMT1-203ENST00000354098 KIAA1024Q9UPX6 916 aa24.79■■□□□ 1.56
SHMT1-203ENST00000354098 STK24Q9Y6E0 443 aa24.79■■□□□ 1.56
SHMT1-203ENST00000354098 TCHHQ07283 1943 aa24.78■■□□□ 1.56
SHMT1-203ENST00000354098 ALPK3Q96L96 1907 aa24.78■■□□□ 1.56
SHMT1-203ENST00000354098 DCDC2CA8MYV0 355 aa24.78■■□□□ 1.56
SHMT1-203ENST00000354098 UBA7P41226 1012 aa24.78■■□□□ 1.56
SHMT1-203ENST00000354098 NPEPPSP55786 919 aa24.78■■□□□ 1.56
SHMT1-203ENST00000354098 PNMA5Q96PV4 448 aa24.78■■□□□ 1.56
SHMT1-203ENST00000354098 CUTAO60888 179 aa24.78■■□□□ 1.56
SHMT1-203ENST00000354098 GRB10Q13322 594 aa24.78■■□□□ 1.56
SHMT1-203ENST00000354098 TARBP2Q15633 366 aaKnown RBP24.78■■□□□ 1.56
SHMT1-203ENST00000354098 MTERF2Q49AM1 385 aa24.78■■□□□ 1.56
SHMT1-203ENST00000354098 ZNF484Q5JVG2 852 aa24.78■■□□□ 1.56
SHMT1-203ENST00000354098 DDX19AQ9NUU7 478 aaKnown RBP24.78■■□□□ 1.56
SHMT1-203ENST00000354098 RRN3P2A6NIE6 340 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms