RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 HSPA8P11142 646 aaKnown RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 CASQ2O14958 399 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 PEPDP12955 493 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 APEHP13798 732 aaKnown RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ETFBP38117 255 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 CCDC102BQ68D86 513 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ATP6V0A1Q93050 837 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 LRRC59Q96AG4 307 aaKnown RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 CXorf56Q9H5V9 222 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 TYW1Q9NV66 732 aaKnown RBP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 SOWAHDA6NJG2 315 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 GOLGA8AA7E2F4 631 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 DDX3XO00571 662 aaKnown RBP eCLIP3.83□□□□□ -1.8
SYNE1-201ENST00000341594 CMA1P23946 247 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 SCNN1BP51168 640 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ACCSLQ4AC99 568 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 RASIP1Q5U651 963 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 CENPKQ9BS16 269 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 SELENOOQ9BVL4 669 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 CETN3O15182 167 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 CLIC2O15247 247 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 TTLL7Q6ZT98 887 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 GSDMAQ96QA5 445 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 NUF2Q9BZD4 464 aa3.83□□□□□ -1.8
SYNE1-201ENST00000341594 ARHGAP42A6NI28 874 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 GOLGA8RI6L899 631 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 MEIS1O00470 390 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 TP73O15350 636 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 PQBP1O60828 265 aaKnown RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 SNUPNO95149 360 aaKnown RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 NAALADL2Q58DX5 795 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 SRGAP1Q7Z6B7 1085 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 ELMO1Q92556 727 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 TAF4BQ92750 862 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 CCDC77Q9BR77 488 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 MAP1BP46821 2468 aaKnown RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 TBC1D12O60347 775 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 SLURP2P0DP57 97 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 VCAM1P19320 739 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 TTKP33981 857 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 SKIV2L2P42285 1042 aaKnown RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 CUL4BQ13620 913 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 RALYLQ86SE5 291 aaKnown RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 DENND4CQ5VZ89 1909 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 ESYT3A0FGR9 886 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 GOLGA6BA6NDN3 693 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 ACTN4O43707 911 aaKnown RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 SKIP12755 728 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 CSE1LP55060 971 aaKnown RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 NCBP1Q09161 790 aaKnown RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 MCM9Q9NXL9 1143 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 ACADSP16219 412 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 HAUS1Q96CS2 278 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 GOLPH3Q9H4A6 298 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 KDM6BO15054 1643 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 KCNA2P16389 499 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 NXNQ6DKJ4 435 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 NCOA6Q14686 2063 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 LRIG3Q6UXM1 1119 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 ANGPT1Q15389 498 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 GRAMD4Q6IC98 578 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 CCDC89Q8N998 374 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 ZSCAN18Q8TBC5 510 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 C14orf93Q9H972 538 aaKnown RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 ARHGEF10LQ9HCE6 1279 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 EHHADHQ08426 723 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 FLCNQ8NFG4 579 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 RPS6KC1Q96S38 1066 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 ERICH2A1L162 156 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 CTAGE15A4D2H0 777 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 FAM107AO95990 144 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 CTAGE8P0CG41 777 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 ATP11AP98196 1134 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 GUCY1A3Q02108 690 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 TRIM60Q495X7 471 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 KIAA1841Q6NSI8 718 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 CTAGE4Q8IX94 777 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 CACNA2D3Q8IZS8 1091 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 CCDC43Q96MW1 224 aaKnown RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 RIOK1Q9BRS2 568 aaKnown RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 RTEL1Q9NZ71 1219 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 DENND4BO75064 1496 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 LRRD1A4D1F6 860 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 SHOX2O60902 331 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 SSRP1Q08945 709 aaKnown RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 TERB1Q8NA31 727 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 LMTK3Q96Q04 1460 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 A0A1B0GVG6 124 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 WEE1P30291 646 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 TRIP10Q15642 601 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 VPS36Q86VN1 386 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 IL20Q9NYY1 176 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 RGL1Q9NZL6 768 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 PDP2Q9P2J9 529 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 TMCO1Q9UM00 188 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 SCAMP1O15126 338 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 PDE1AP54750 535 aa3.82□□□□□ -1.8
SYNE1-201ENST00000341594 ZNF483Q8TF39 744 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-201ENST00000341594 LRRK1Q38SD2 2015 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms