RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 SPEF2Q9C093 1822 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 MOCS3O95396 460 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 MT-ND3P03897 115 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 STX1BP61266 288 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 YWHAGP61981 247 aaKnown RBP eCLIP11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 EXOSC10Q01780 885 aaKnown RBP11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 TAF12Q16514 161 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 TBC1D9BQ66K14 1250 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 ALKBH8Q96BT7 664 aaKnown RBP11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 IVNS1ABPQ9Y6Y0 642 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 OVOS2A0A0J9YW53 1432 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 OVOS2Q6IE36 1432 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 NR5A1Q13285 461 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 TAF11Q15544 211 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 MMEL1Q495T6 779 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 AGBL2Q5U5Z8 902 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 MIS18BP1Q6P0N0 1132 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 UPF3AQ9H1J1 476 aaKnown RBP11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 INTUQ9ULD6 942 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 SMG5Q9UPR3 1016 aaKnown RBP11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 ZHX2Q9Y6X8 837 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 FER1L4A9Z1Z3 1794 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 MYH3P11055 1940 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 ADGRB1O14514 1584 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 MYO1EQ12965 1108 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 RIBC1Q8N443 379 aaPredicted RBP11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 ZNF577Q9BSK1 485 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 PUS7LQ9H0K6 701 aaKnown RBP11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 MESDQ14696 234 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 SLAIN2Q9P270 581 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 SMARCA1P28370 1054 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 SLC1A1P43005 524 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 DLGAP5Q15398 846 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 RABL6Q3YEC7 729 aaPredicted RBP11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 NYAP1Q6ZVC0 841 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 NIM1KQ8IY84 436 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 ORAI2Q96SN7 254 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 L2HGDHQ9H9P8 463 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 DDX56Q9NY93 547 aaKnown RBP11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 PCDHB4Q9Y5E5 795 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 TRMT10CQ7L0Y3 403 aaKnown RBP11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 MCPH1Q8NEM0 835 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 KLC2Q9H0B6 622 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 KIF1AQ12756 1690 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 hCG_1642624A0A1W2PR95 340 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 USP11P51784 963 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 AP3M2P53677 418 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 AGTP01019 485 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 MDM2Q00987 491 aaPredicted RBP11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 GRM4Q14833 912 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 PROSER3Q2NL68 480 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 RBM43Q6ZSC3 357 aaKnown RBP11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 TSC22D3Q99576 134 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 BARHL2Q9NY43 387 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 TUBE1Q9UJT0 475 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 PTPN22Q9Y2R2 807 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 AP2B1P63010 937 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 CDK17Q00537 523 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 CDR2Q01850 454 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 PITPNM3Q9BZ71 974 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 CHD4Q14839 1912 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 AP3B1O00203 1094 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 SNF8Q96H20 258 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 MON2Q7Z3U7 1717 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 NWD1Q149M9 1564 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 ARHGAP10A1A4S6 786 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 PALMO75781 387 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 GPC5P78333 572 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 CC2D2BQ6DHV5 1058 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 SAAL1Q96ER3 474 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 STAMBPL1Q96FJ0 436 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 GOLPH3LQ9H4A5 285 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 LMTK3Q96Q04 1460 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 EIF3HO15372 352 aaKnown RBP eCLIP11.05□□□□□ -0.643e-6■■□□□ 13.8
CCDC88A-202ENST00000336838 CCND2P30279 289 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 GYG1P46976 350 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 EIF6P56537 245 aaKnown RBP11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 PDE1BQ01064 536 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 EPM2AIP1Q7L775 607 aaPredicted RBP11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 RFFLQ8WZ73 363 aa11.05□□□□□ -0.64
CCDC88A-202ENST00000336838 SPAG7O75391 227 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 PYGBP11216 843 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 HARSP12081 509 aaKnown RBP11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 MCAMP43121 646 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 KYAT1Q16773 422 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 SRLQ86TD4 932 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 PI4KBQ9UBF8 816 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 SNX12Q9UMY4 172 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 RASGRF1Q13972 1273 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 RAD54LQ92698 747 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 CNKSR1Q969H4 720 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 TTC1Q99614 292 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 TECPR2O15040 1411 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 SH3BP5O60239 455 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 LARGE1O95461 756 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 CHGBP05060 677 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 KRT19P08727 400 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 KRT7P08729 469 aa11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 LRRC23Q53EV4 343 aaPredicted RBP11.04□□□□□ -0.64
CCDC88A-202ENST00000336838 PARP9Q8IXQ6 854 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms