RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 HLFQ16534 295 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 MTERF2Q49AM1 385 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 CCDC80Q76M96 950 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 RNF139Q8WU17 664 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 GJA10Q969M2 543 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 ZNF512BQ96KM6 892 aaPredicted RBP13.77□□□□□ -0.21
USP40-201ENST00000251722 SPZ1Q9BXG8 430 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 HACL1Q9UJ83 578 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 PXDNLA1KZ92 1463 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 MTMR1Q13613 665 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 FAM173BQ6P4H8 233 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 CMTR1Q8N1G2 835 aaKnown RBP13.77□□□□□ -0.21
USP40-201ENST00000251722 PROM2Q8N271 834 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 SH3RF3Q8TEJ3 882 aaPredicted RBP13.77□□□□□ -0.21
USP40-201ENST00000251722 KATNAL1Q9BW62 490 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 PPP1R9AQ9ULJ8 1098 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 TBC1D8O95759 1140 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 ATF2P15336 505 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 MCAMP43121 646 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 PFKFB3Q16875 520 aaPredicted RBP13.77□□□□□ -0.21
USP40-201ENST00000251722 NBPF10Q6P3W6 841 aaKnown RBP13.77□□□□□ -0.21
USP40-201ENST00000251722 CATSPER4Q7RTX7 472 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 C17orf53Q8N3J3 647 aaPredicted RBP13.77□□□□□ -0.21
USP40-201ENST00000251722 PARK7Q99497 189 aaKnown RBP13.77□□□□□ -0.21
USP40-201ENST00000251722 SLC38A10Q9HBR0 1119 aa13.77□□□□□ -0.21
USP40-201ENST00000251722 RGL2O15211 777 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 ITKQ08881 620 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 CUL4AQ13619 759 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 TRIM42Q8IWZ5 723 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 CCDC170Q8IYT3 715 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 Q9H521 79 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 EMILIN3Q9NT22 766 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 RCOR1Q9UKL0 485 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 NEXMIFQ5QGS0 1516 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 KRIT1O00522 736 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 MXI1P50539 228 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 DSTYKQ6XUX3 929 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 TRMT44Q8IYL2 757 aaKnown RBP13.76□□□□□ -0.21
USP40-201ENST00000251722 NME8Q8N427 588 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 PCDHA6Q9UN73 950 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 DIS3Q9Y2L1 958 aaKnown RBP13.76□□□□□ -0.21
USP40-201ENST00000251722 PCDHA8Q9Y5H6 950 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 GKAP1Q5VSY0 366 aaPredicted RBP13.76□□□□□ -0.21
USP40-201ENST00000251722 RAB44Q7Z6P3 723 aaPredicted RBP13.76□□□□□ -0.21
USP40-201ENST00000251722 TRIM56Q9BRZ2 755 aaKnown RBP13.76□□□□□ -0.21
USP40-201ENST00000251722 APOL6Q9BWW8 343 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 SLC16A2P36021 539 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 ADCY8P40145 1251 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 BLVRAP53004 296 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 BEST2Q8NFU1 509 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 RMDN3Q96TC7 470 aa13.76□□□□□ -0.21
USP40-201ENST00000251722 TAF11Q15544 211 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 HHIPL2Q6UWX4 724 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 EP400NLQ6ZTU2 488 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 MIGA2Q7L4E1 593 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 STAMQ92783 540 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 MSTO1Q9BUK6 570 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 MID2Q9UJV3 735 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 TTLL3Q9Y4R7 772 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 RASSF10A6NK89 507 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 NFIXQ14938 502 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 TBC1D10BQ4KMP7 808 aaPredicted RBP13.75□□□□□ -0.21
USP40-201ENST00000251722 SNRNP48Q6IEG0 339 aaKnown RBP13.75□□□□□ -0.21
USP40-201ENST00000251722 ALDH8A1Q9H2A2 487 aaPredicted RBP13.75□□□□□ -0.21
USP40-201ENST00000251722 ANTXR1Q9H6X2 564 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 RNF146Q9NTX7 359 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 INO80Q9ULG1 1556 aaPredicted RBP13.75□□□□□ -0.21
USP40-201ENST00000251722 CEP152O94986 1710 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 ESYT2A0FGR8 921 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 PRKAB2O43741 272 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 RNF40O75150 1001 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 MAPK6Q16659 721 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 KLHL7Q8IXQ5 586 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 SRRM1Q8IYB3 904 aaKnown RBP13.75□□□□□ -0.21
USP40-201ENST00000251722 ZBED2Q9BTP6 218 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 NRXN1Q9ULB1 1477 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 CLIC4Q9Y696 253 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 SPATA31A5Q5VU36 1347 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 SPATA31A7Q8IWB4 1347 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 WDR46O15213 610 aaKnown RBP13.75□□□□□ -0.21
USP40-201ENST00000251722 USP11P51784 963 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 GPSM2P81274 684 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 TSPY1Q01534 308 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 RABGGTAQ92696 567 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 RIMBP3CA6NJZ7 1639 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 RIMBP3BA6NNM3 1639 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 RIMBP3Q9UFD9 1639 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 PRAMEF22A3QJZ6 481 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 OPHN1O60890 802 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 DNAJC24Q6P3W2 148 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 C7orf31Q8N865 590 aa13.75□□□□□ -0.21
USP40-201ENST00000251722 SKIP12755 728 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 UBXN2AP68543 259 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 SREBF2Q12772 1141 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 MFSD4BQ5TF39 518 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 ZNF589Q86UQ0 364 aaPredicted RBP13.74□□□□□ -0.21
USP40-201ENST00000251722 NEDD1Q8NHV4 660 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 DYNLL2Q96FJ2 89 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 ABCA6Q8N139 1617 aa13.74□□□□□ -0.21
USP40-201ENST00000251722 PVALEFA0A1B0GWK0 134 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms