RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 PALM3A6NDB9 673 aaPredicted RBP9.63□□□□□ -0.87
VPS4B-201ENST00000238497 STXBP3O00186 592 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 ADAMTS4O75173 837 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 BMP15O95972 392 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 KRT18P05783 430 aaKnown RBP9.63□□□□□ -0.87
VPS4B-201ENST00000238497 CCZ1BP86790 482 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 CCZ1P86791 482 aaPredicted RBP9.63□□□□□ -0.87
VPS4B-201ENST00000238497 MTF1Q14872 753 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 IQSEC1Q6DN90 963 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 SH3RF1Q7Z6J0 888 aa9.63□□□□□ -0.87
VPS4B-201ENST00000238497 GCOM1H8Y6P7 765 aaPredicted RBP9.62□□□□□ -0.87
VPS4B-201ENST00000238497 POLR2MP0CAP2 368 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 PLCG1P19174 1290 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 ZNF76P36508 570 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 ADCY7P51828 1080 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 GNG11P61952 73 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 NEK8Q86SG6 692 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 SCFD2Q8WU76 684 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 CCDC12Q8WUD4 166 aaPredicted RBP9.62□□□□□ -0.87
VPS4B-201ENST00000238497 BAG1Q99933 345 aaPredicted RBP9.62□□□□□ -0.87
VPS4B-201ENST00000238497 SRRTQ9BXP5 876 aaKnown RBP9.62□□□□□ -0.87
VPS4B-201ENST00000238497 LRWD1Q9UFC0 647 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 RPN1P04843 607 aaKnown RBP9.62□□□□□ -0.87
VPS4B-201ENST00000238497 TPM1P09493 284 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 PSMC6P62333 389 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 SP4Q02446 784 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 UBXN1Q04323 297 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 TTLL4Q14679 1199 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 STXBP2Q15833 593 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 BADQ92934 168 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 CUL5Q93034 780 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 MTA3Q9BTC8 594 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 IRX2Q9BZI1 471 aaPredicted RBP9.62□□□□□ -0.87
VPS4B-201ENST00000238497 PHF24Q9UPV7 400 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 NOD1Q9Y239 953 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 MOXD2PA6NHM9 499 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 IKBKBO14920 756 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 PRCPP42785 496 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 TRAF1Q13077 416 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 MORC3Q14149 939 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 CALCRLQ16602 461 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 CCDC150Q8NCX0 1101 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 CALML4Q96GE6 196 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 ZMYND15Q9H091 742 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 COL20A1Q9P218 1284 aa9.62□□□□□ -0.87
VPS4B-201ENST00000238497 MAGEC2Q9UBF1 373 aaPredicted RBP9.62□□□□□ -0.87
VPS4B-201ENST00000238497 PNMA6FA0A0J9YX94 578 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 NR3C2P08235 984 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 CLTBP09497 229 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 OR52Z1P0C646 297 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 MTIF2P46199 727 aaKnown RBP9.61□□□□□ -0.87
VPS4B-201ENST00000238497 GJA9P57773 515 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 DPYDQ12882 1025 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 SNX29Q8TEQ0 813 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 CCDC47Q96A33 483 aaKnown RBP9.61□□□□□ -0.87
VPS4B-201ENST00000238497 LRCH3Q96II8 777 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 PRIMPOLQ96LW4 560 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 PSTPIP2Q9H939 334 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 EXOC1Q9NV70 894 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 A0A0C4DFX4 3053 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 A0A0G2JMZ2 1700 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 RBBP6Q7Z6E9 1792 aaKnown RBP9.61□□□□□ -0.87
VPS4B-201ENST00000238497 DYNC1I1O14576 645 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 IGHA2P01877 340 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 PAK1Q13153 545 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 MCM6Q14566 821 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 E4F1Q66K89 784 aaPredicted RBP9.61□□□□□ -0.87
VPS4B-201ENST00000238497 SPECC1LQ69YQ0 1117 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 TAPT1Q6NXT6 567 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 MNS1Q8NEH6 495 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 DNERQ8NFT8 737 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 SPTLC3Q9NUV7 552 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 ZNF215Q9UL58 517 aaPredicted RBP9.61□□□□□ -0.87
VPS4B-201ENST00000238497 SOWAHDA6NJG2 315 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 TLR3O15455 904 aaKnown RBP9.61□□□□□ -0.87
VPS4B-201ENST00000238497 CHMP2AO43633 222 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 PPP1R11O60927 126 aaPredicted RBP9.61□□□□□ -0.87
VPS4B-201ENST00000238497 CASP14P31944 242 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 RCAN1P53805 252 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 RBL2Q08999 1139 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 STIM1Q13586 685 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 LY6KQ17RY6 165 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 TSR1Q2NL82 804 aaKnown RBP9.61□□□□□ -0.87
VPS4B-201ENST00000238497 DUSP28Q4G0W2 176 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 PDCL2Q8N4E4 241 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 ZNF579Q8NAF0 562 aaKnown RBP9.61□□□□□ -0.87
VPS4B-201ENST00000238497 MED15Q96RN5 788 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 HSD3B7Q9H2F3 369 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 DISC1Q9NRI5 854 aa9.61□□□□□ -0.87
VPS4B-201ENST00000238497 MEIS1O00470 390 aa9.6□□□□□ -0.87
VPS4B-201ENST00000238497 FXR1P51114 621 aaKnown RBP eCLIP9.6□□□□□ -0.87
VPS4B-201ENST00000238497 CYP4A11Q02928 519 aa9.6□□□□□ -0.87
VPS4B-201ENST00000238497 KMT5BQ4FZB7 885 aa9.6□□□□□ -0.87
VPS4B-201ENST00000238497 KRT25Q7Z3Z0 450 aa9.6□□□□□ -0.87
VPS4B-201ENST00000238497 NELFCDQ8IXH7 590 aa9.6□□□□□ -0.87
VPS4B-201ENST00000238497 KLHDC9Q8NEP7 349 aa9.6□□□□□ -0.87
VPS4B-201ENST00000238497 PPP1R13BQ96KQ4 1090 aa9.6□□□□□ -0.87
VPS4B-201ENST00000238497 FAM161BQ96MY7 647 aa9.6□□□□□ -0.87
VPS4B-201ENST00000238497 MTRQ99707 1265 aa9.6□□□□□ -0.87
VPS4B-201ENST00000238497 GDF15Q99988 308 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 488.1 ms