RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 REXO2Q9Y3B8 237 aaKnown RBP7.43□□□□□ -1.22
SCN1A-213ENST00000636759 GLI1P08151 1106 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 PDIA3P30101 505 aaKnown RBP7.43□□□□□ -1.22
SCN1A-213ENST00000636759 HOXD12P35452 270 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 HSPA9P38646 679 aaKnown RBP7.43□□□□□ -1.22
SCN1A-213ENST00000636759 PDE6CP51160 858 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 ANTXR2P58335 489 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 UBXN1Q04323 297 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 WASHC4Q2M389 1173 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 CNPY1Q3B7I2 92 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 MCMDC2Q4G0Z9 681 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 ERMARDQ5T6L9 678 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 THOC7Q6I9Y2 204 aaKnown RBP7.43□□□□□ -1.22
SCN1A-213ENST00000636759 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.43□□□□□ -1.22
SCN1A-213ENST00000636759 LRRC34Q8IZ02 419 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 PIGOQ8TEQ8 1089 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 UCMAQ8WVF2 138 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 PPP2R3CQ969Q6 453 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 OLFM3Q96PB7 478 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 OXCT2Q9BYC2 517 aaPredicted RBP7.43□□□□□ -1.22
SCN1A-213ENST00000636759 GPCPD1Q9NPB8 672 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 RBM12Q9NTZ6 932 aaKnown RBP7.43□□□□□ -1.22
SCN1A-213ENST00000636759 INTS9Q9NV88 658 aaKnown RBP7.43□□□□□ -1.22
SCN1A-213ENST00000636759 NID2Q14112 1375 aa7.43□□□□□ -1.22
SCN1A-213ENST00000636759 FOXN1O15353 648 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 SERPINB3P29508 390 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 HERVK_113P62684 666 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 TNNC1P63316 161 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 PHEXP78562 749 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 USH1GQ495M9 461 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 RESP18Q5W5W9 173 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 SLC17A8Q8NDX2 589 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 MDM1Q8TC05 714 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 NAP1L3Q99457 506 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 ETNK1Q9HBU6 452 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 GDF3Q9NR23 364 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 SMARCAL1Q9NZC9 954 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 CNOT8Q9UFF9 292 aaKnown RBP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 ZNF180Q9UJW8 692 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 FRMD4BQ9Y2L6 1034 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 IDO1P14902 403 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 PRLRP16471 622 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 GNAT2P19087 354 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 HSD17B3P37058 310 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 NEK2P51955 445 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 MTTPP55157 894 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 MORC3Q14149 939 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 CCDC152Q4G0S7 254 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 TRIM50Q86XT4 487 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 RETREG2Q8NC44 543 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 STKLD1Q8NE28 680 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 LRRC8CQ8TDW0 803 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 CENPTQ96BT3 561 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 NLRP3Q96P20 1036 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 ARHGEF3Q9NR81 526 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 TAB2Q9NYJ8 693 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 CYP39A1Q9NYL5 469 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 ZMYND8Q9ULU4 1186 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 SYNPO2Q9UMS6 1093 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 TMEM247A6NEH6 219 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 SMIM23A6NLE4 172 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 KIF28PB7ZC32 967 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 E7EWF7 191 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 HGSO14964 777 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 ATP9AO75110 1047 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 ITGA2BP08514 1039 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 POTEJP0CG39 1038 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 HSPD1P10809 573 aaKnown RBP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 CCNFP41002 786 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 PTDSS1P48651 473 aaKnown RBP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 ADARP55265 1226 aaKnown RBP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 ZNF844Q08AG5 666 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 KPNB1Q14974 876 aaKnown RBP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 TTF1Q15361 905 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 NFRKBQ6P4R8 1299 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 RSPH1Q8WYR4 309 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 ZNF274Q96GC6 653 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 PCMTD1Q96MG8 357 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 KRT12Q99456 494 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 SPATA16Q9BXB7 569 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 LACRTQ9GZZ8 138 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 RNF14Q9UBS8 474 aa7.42□□□□□ -1.22
SCN1A-213ENST00000636759 USP15Q9Y4E8 981 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-213ENST00000636759 ZSCAN5CA6NGD5 496 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 POLR2DO15514 142 aaKnown RBP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 TJP3O95049 919 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 LMNAP02545 664 aaKnown RBP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 CHN1P15882 459 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 GNAZP19086 355 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 VHLP40337 213 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 DNA2P51530 1060 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 COPB1P53618 953 aaKnown RBP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 HDAC4P56524 1084 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 DHX9Q08211 1270 aaKnown RBP7.41□□□□□ -1.22
SCN1A-213ENST00000636759 LSAMPQ13449 338 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 CACNA1SQ13698 1873 aa7.41□□□□□ -1.22
SCN1A-213ENST00000636759 TMEM53Q6P2H8 277 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms