RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TREML2Q5T2D2 321 aa17.33■□□□□ 0.37
CPSF1-213ENST00000620219 BLOC1S4Q9NUP1 217 aa17.33■□□□□ 0.37
CPSF1-213ENST00000620219 PPP2R3BQ9Y5P8 575 aa17.33■□□□□ 0.37
CPSF1-213ENST00000620219 CCL15-CCL14A0A0B4J2E2 113 aa17.33■□□□□ 0.36
CPSF1-213ENST00000620219 DKC1O60832 514 aaKnown RBP eCLIP17.33■□□□□ 0.36
CPSF1-213ENST00000620219 CYP2C8P10632 490 aa17.33■□□□□ 0.36
CPSF1-213ENST00000620219 HUNKP57058 714 aa17.33■□□□□ 0.36
CPSF1-213ENST00000620219 CCL15Q16663 113 aa17.33■□□□□ 0.36
CPSF1-213ENST00000620219 PDCD2LQ9BRP1 358 aa17.33■□□□□ 0.36
CPSF1-213ENST00000620219 FBXO40Q9UH90 709 aa17.33■□□□□ 0.36
CPSF1-213ENST00000620219 ZHX1Q9UKY1 873 aaPredicted RBP17.33■□□□□ 0.36
CPSF1-213ENST00000620219 TMEM150BA6NC51 233 aa17.33■□□□□ 0.36
CPSF1-213ENST00000620219 XRCC5P13010 732 aaKnown RBP17.33■□□□□ 0.36
CPSF1-213ENST00000620219 KCNB1Q14721 858 aa17.33■□□□□ 0.36
CPSF1-213ENST00000620219 EPHA7Q15375 998 aa17.33■□□□□ 0.36
CPSF1-213ENST00000620219 CDHR1Q96JP9 859 aa17.33■□□□□ 0.36
CPSF1-213ENST00000620219 MMTAG2Q9BU76 263 aaKnown RBP17.33■□□□□ 0.36
CPSF1-213ENST00000620219 PHF20L1A8MW92 1017 aa17.32■□□□□ 0.36
CPSF1-213ENST00000620219 M0R2N6 131 aa17.32■□□□□ 0.36
CPSF1-213ENST00000620219 CASQ1P31415 396 aa17.32■□□□□ 0.36
CPSF1-213ENST00000620219 FASTKD5Q7L8L6 764 aaKnown RBP17.32■□□□□ 0.36
CPSF1-213ENST00000620219 SH3RF1Q7Z6J0 888 aa17.32■□□□□ 0.36
CPSF1-213ENST00000620219 ANKRD13CQ8N6S4 541 aa17.32■□□□□ 0.36
CPSF1-213ENST00000620219 GIMAP8Q8ND71 665 aaPredicted RBP17.32■□□□□ 0.36
CPSF1-213ENST00000620219 WDR18Q9BV38 432 aa17.32■□□□□ 0.36
CPSF1-213ENST00000620219 GINM1Q9NU53 330 aa17.32■□□□□ 0.36
CPSF1-213ENST00000620219 EEF1GP26641 437 aaKnown RBP17.32■□□□□ 0.36
CPSF1-213ENST00000620219 SNAPC2Q13487 334 aa17.32■□□□□ 0.36
CPSF1-213ENST00000620219 ECM1Q16610 540 aa17.32■□□□□ 0.36
CPSF1-213ENST00000620219 CT47A1Q5JQC4 288 aaPredicted RBP17.32■□□□□ 0.36
CPSF1-213ENST00000620219 CEP89Q96ST8 783 aa17.32■□□□□ 0.36
CPSF1-213ENST00000620219 CYP11B2P19099 503 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 ZC2HC1CQ53FD0 456 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-213ENST00000620219 GLIS3Q8NEA6 775 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 PPP1R13BQ96KQ4 1090 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 PRIMPOLQ96LW4 560 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 MED15Q96RN5 788 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 MMP19Q99542 508 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 RUSC1Q9BVN2 902 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 LSM14BQ9BX40 385 aaKnown RBP17.31■□□□□ 0.36
CPSF1-213ENST00000620219 PNMA3Q9UL41 463 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 ZBTB22O15209 634 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 ARHGAP6O43182 974 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 EYA4O95677 639 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 TMEM132BQ14DG7 1078 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-213ENST00000620219 HSD3B7Q9H2F3 369 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 GOLGA8IPA6NC78 632 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 GOLGA8JA6NMD2 632 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 CYLC1P35663 651 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-213ENST00000620219 LTBP3Q9NS15 1303 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 PSAPP07602 524 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 DMP1Q13316 513 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-213ENST00000620219 NT5DC1Q5TFE4 455 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 A1CFQ9NQ94 594 aaKnown RBP17.31■□□□□ 0.36
CPSF1-213ENST00000620219 INTS13Q9NVM9 706 aa17.31■□□□□ 0.36
CPSF1-213ENST00000620219 SLC16A4O15374 487 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 KRT76Q01546 638 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 PSMD2Q13200 908 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 MIS18BP1Q6P0N0 1132 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 DHX37Q8IY37 1157 aaKnown RBP17.3■□□□□ 0.36
CPSF1-213ENST00000620219 LUC7LQ9NQ29 371 aaKnown RBP17.3■□□□□ 0.36
CPSF1-213ENST00000620219 PXMP2Q9NR77 195 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 POLR2FP61218 127 aaKnown RBP17.3■□□□□ 0.36
CPSF1-213ENST00000620219 HERVK_113P62684 666 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 USP50Q70EL3 339 aaPredicted RBP17.3■□□□□ 0.36
CPSF1-213ENST00000620219 VTI1AQ96AJ9 217 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 ASCC2Q9H1I8 757 aaPredicted RBP17.3■□□□□ 0.36
CPSF1-213ENST00000620219 JPH1Q9HDC5 661 aaPredicted RBP17.3■□□□□ 0.36
CPSF1-213ENST00000620219 PCDHA10Q9Y5I2 948 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 ANKRD31Q8N7Z5 1873 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 MYBP10242 640 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 STRN3Q13033 797 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 ZFYVE27Q5T4F4 411 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 TOGARAM2Q6ZUX3 1019 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 GUF1Q8N442 669 aaKnown RBP17.3■□□□□ 0.36
CPSF1-213ENST00000620219 OR8K1Q8NGG5 319 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 DEPTORQ8TB45 409 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 MTMR8Q96EF0 704 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 PPP2R2CQ9Y2T4 447 aa17.3■□□□□ 0.36
CPSF1-213ENST00000620219 GLTPD2A6NH11 291 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 HIP1RO75146 1068 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 PHACTR2O75167 634 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 YWHABP31946 246 aaKnown RBP17.29■□□□□ 0.36
CPSF1-213ENST00000620219 PGM5Q15124 567 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 ARHGAP44Q17R89 818 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 Q4G0T1 1027 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 SLC7A3Q8WY07 619 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 NDST4Q9H3R1 872 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 THAP9Q9H5L6 903 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 COL20A1Q9P218 1284 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 SLC9A2Q9UBY0 812 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 MACROD2A1Z1Q3 448 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 HNRNPDLO14979 420 aaKnown RBP17.29■□□□□ 0.36
CPSF1-213ENST00000620219 ITGB5P18084 799 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 NOP2P46087 812 aaKnown RBP17.29■□□□□ 0.36
CPSF1-213ENST00000620219 BIRC3Q13489 604 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 NAA30Q147X3 362 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-213ENST00000620219 SCN9AQ15858 1988 aa17.29■□□□□ 0.36
CPSF1-213ENST00000620219 ZNF569Q5MCW4 686 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms