RNA–Protein interactions for RNA: ENST00000618856.1

NEK3-209, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-209ENST00000618856 U2AF2P26368 475 aaKnown RBP eCLIP9.35□□□□□ -0.917e-7■■□□□ 12.2
NEK3-209ENST00000618856 RFC2P35250 354 aa9.35□□□□□ -0.91
NEK3-209ENST00000618856 FXR1P51114 621 aaKnown RBP eCLIP9.35□□□□□ -0.91
NEK3-209ENST00000618856 ZNF200P98182 395 aaPredicted RBP9.35□□□□□ -0.91
NEK3-209ENST00000618856 FAM47CQ5HY64 1035 aa9.35□□□□□ -0.91
NEK3-209ENST00000618856 C9orf50Q5SZB4 431 aa9.35□□□□□ -0.91
NEK3-209ENST00000618856 PIK3AP1Q6ZUJ8 805 aa9.35□□□□□ -0.91
NEK3-209ENST00000618856 CCDC60Q8IWA6 550 aaPredicted RBP9.35□□□□□ -0.91
NEK3-209ENST00000618856 TMEM199Q8N511 208 aa9.35□□□□□ -0.91
NEK3-209ENST00000618856 RDM1Q8NG50 284 aa9.35□□□□□ -0.91
NEK3-209ENST00000618856 SP7Q8TDD2 431 aaPredicted RBP9.35□□□□□ -0.91
NEK3-209ENST00000618856 HAS1Q92839 578 aa9.35□□□□□ -0.91
NEK3-209ENST00000618856 NAP1L4Q99733 375 aaKnown RBP9.35□□□□□ -0.91
NEK3-209ENST00000618856 FOXP1Q9H334 677 aaPredicted RBP9.35□□□□□ -0.91
NEK3-209ENST00000618856 VAV3Q9UKW4 847 aa9.35□□□□□ -0.91
NEK3-209ENST00000618856 IGSF9BQ9UPX0 1349 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 C17orf102A2RUQ5 167 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 ZBTB42B2RXF5 422 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 WNT7AO00755 349 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 TREHO43280 583 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 CXCL10P02778 98 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 PFKMP08237 780 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 GNAT1P11488 350 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 CKBP12277 381 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 STAT5BP51692 787 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 SP4Q02446 784 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 SPIRE1Q08AE8 756 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 PPP2R5CQ13362 524 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 PPIGQ13427 754 aaKnown RBP eCLIP9.34□□□□□ -0.916e-8■□□□□ 9.7
NEK3-209ENST00000618856 BFSP2Q13515 415 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 PLCB4Q15147 1175 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 SHHQ15465 462 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 LETM2Q2VYF4 491 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 FAM26DQ5JW98 314 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 TMEM240Q5SV17 173 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 UTP14CQ5TAP6 766 aaKnown RBP9.34□□□□□ -0.91
NEK3-209ENST00000618856 LMBR1Q8WVP7 490 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 C8orf76Q96K31 380 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 FAM20AQ96MK3 541 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 MTMR9Q96QG7 549 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 PPP1R12CQ9BZL4 782 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 BRMS1Q9HCU9 246 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 IL23AQ9NPF7 189 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 RTN4Q9NQC3 1192 aaKnown RBP9.34□□□□□ -0.91
NEK3-209ENST00000618856 SETD4Q9NVD3 440 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 DDX25Q9UHL0 483 aaKnown RBP9.34□□□□□ -0.91
NEK3-209ENST00000618856 PCDHA10Q9Y5I2 948 aa9.34□□□□□ -0.91
NEK3-209ENST00000618856 RRN3P2A6NIE6 340 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 WDR64B1ANS9 1081 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 STBD1O95210 358 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 PARNO95453 639 aaKnown RBP9.33□□□□□ -0.92
NEK3-209ENST00000618856 SELPP16109 830 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 SFNP31947 248 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 JAK3P52333 1124 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 CCL23P55773 120 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 ORC2Q13416 577 aaPredicted RBP9.33□□□□□ -0.92
NEK3-209ENST00000618856 MKRN4PQ13434 485 aaPredicted RBP9.33□□□□□ -0.92
NEK3-209ENST00000618856 TRIM29Q14134 588 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 MBTPS1Q14703 1052 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 GRIK4Q16099 956 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 LRCH2Q5VUJ6 765 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 GPR153Q6NV75 609 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 MIS18BP1Q6P0N0 1132 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 PSRC1Q6PGN9 363 aaPredicted RBP9.33□□□□□ -0.92
NEK3-209ENST00000618856 CCDC155Q8N6L0 562 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 ATP8B4Q8TF62 1192 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 HERVK_113Q902F9 699 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 GLG1Q92896 1179 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 ATP6V0A1Q93050 837 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 GJA10Q969M2 543 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 SNX21Q969T3 373 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.33□□□□□ -0.92
NEK3-209ENST00000618856 TEKT3Q9BXF9 490 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 UNC45AQ9H3U1 944 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 AZI2Q9H6S1 392 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 ZNF302Q9NR11 478 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 DISC1Q9NRI5 854 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 COL1A2P08123 1366 aa9.33□□□□□ -0.92
NEK3-209ENST00000618856 CDH23Q9H251 3354 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 KIF28PB7ZC32 967 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 DDX39AO00148 427 aaKnown RBP9.32□□□□□ -0.92
NEK3-209ENST00000618856 SOX1O00570 391 aaPredicted RBP9.32□□□□□ -0.92
NEK3-209ENST00000618856 ZNF862O60290 1169 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 HBP1O60381 514 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 CCNT1O60563 726 aaKnown RBP9.32□□□□□ -0.92
NEK3-209ENST00000618856 GAS7O60861 476 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 NBNO60934 754 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 PSAPP07602 524 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 INSRRP14616 1297 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 TRAPPC10P48553 1259 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 GUCY1B3Q02153 619 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 MGAT3Q09327 533 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 PPFIA1Q13136 1202 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 SAFBQ15424 915 aaKnown RBP eCLIP9.32□□□□□ -0.92
NEK3-209ENST00000618856 FAM160B1Q5W0V3 765 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 SWSAP1Q6NVH7 229 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 TAF2Q6P1X5 1199 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 ZNF365Q70YC5 407 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 LRRC8DQ7L1W4 858 aa9.32□□□□□ -0.92
NEK3-209ENST00000618856 NOSTRINQ8IVI9 506 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms