RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 VAV3Q9UKW4 847 aa16.19■□□□□ 0.18
LIG1-208ENST00000595758 DNAH12Q6ZR08 3092 aa16.18■□□□□ 0.18
LIG1-208ENST00000595758 TNRC18O15417 2968 aaPredicted RBP16.18■□□□□ 0.18
LIG1-208ENST00000595758 B4GALT4O60513 344 aa16.18■□□□□ 0.18
LIG1-208ENST00000595758 SLC26A2P50443 739 aa16.18■□□□□ 0.18
LIG1-208ENST00000595758 PPP2R5CQ13362 524 aa16.18■□□□□ 0.18
LIG1-208ENST00000595758 GDF6Q6KF10 455 aaPredicted RBP16.18■□□□□ 0.18
LIG1-208ENST00000595758 PDXDC2PQ6P474 469 aa16.18■□□□□ 0.18
LIG1-208ENST00000595758 SH3RF1Q7Z6J0 888 aa16.18■□□□□ 0.18
LIG1-208ENST00000595758 CCDC60Q8IWA6 550 aaPredicted RBP16.18■□□□□ 0.18
LIG1-208ENST00000595758 AFAP1L1Q8TED9 768 aa16.18■□□□□ 0.18
LIG1-208ENST00000595758 GABBR1Q9UBS5 961 aa16.18■□□□□ 0.18
LIG1-208ENST00000595758 GTF2IRD1Q9UHL9 959 aa16.18■□□□□ 0.18
LIG1-208ENST00000595758 PCDHA12Q9UN75 941 aa16.18■□□□□ 0.18
LIG1-208ENST00000595758 MTMR6Q9Y217 621 aa16.18■□□□□ 0.18
LIG1-208ENST00000595758 NOD1Q9Y239 953 aa16.18■□□□□ 0.18
LIG1-208ENST00000595758 PCDHB6Q9Y5E3 794 aa16.18■□□□□ 0.18
LIG1-208ENST00000595758 C17orf102A2RUQ5 167 aa16.17■□□□□ 0.18
LIG1-208ENST00000595758 TRIM43BA6NCK2 446 aa16.17■□□□□ 0.18
LIG1-208ENST00000595758 KIAA0355O15063 1070 aa16.17■□□□□ 0.18
LIG1-208ENST00000595758 PDIA4P13667 645 aaKnown RBP16.17■□□□□ 0.18
LIG1-208ENST00000595758 SYN1P17600 705 aa16.17■□□□□ 0.18
LIG1-208ENST00000595758 TXKP42681 527 aa16.17■□□□□ 0.18
LIG1-208ENST00000595758 PLCB4Q15147 1175 aa16.17■□□□□ 0.18
LIG1-208ENST00000595758 PTGISQ16647 500 aa16.17■□□□□ 0.18
LIG1-208ENST00000595758 TNPO1Q92973 898 aaKnown RBP16.17■□□□□ 0.18
LIG1-208ENST00000595758 TRIM43Q96BQ3 446 aaPredicted RBP16.17■□□□□ 0.18
LIG1-208ENST00000595758 TTC12Q9H892 705 aaPredicted RBP16.17■□□□□ 0.18
LIG1-208ENST00000595758 SETD4Q9NVD3 440 aa16.17■□□□□ 0.18
LIG1-208ENST00000595758 TBX21Q9UL17 535 aa16.17■□□□□ 0.18
LIG1-208ENST00000595758 MAFBQ9Y5Q3 323 aaPredicted RBP16.17■□□□□ 0.18
LIG1-208ENST00000595758 EML1O00423 815 aa16.16■□□□□ 0.18
LIG1-208ENST00000595758 OR52Z1P0C646 297 aa16.16■□□□□ 0.18
LIG1-208ENST00000595758 GNAT1P11488 350 aa16.16■□□□□ 0.18
LIG1-208ENST00000595758 CYP2C9P11712 490 aa16.16■□□□□ 0.18
LIG1-208ENST00000595758 ZNF200P98182 395 aaPredicted RBP16.16■□□□□ 0.18
LIG1-208ENST00000595758 PPFIA1Q13136 1202 aa16.16■□□□□ 0.18
LIG1-208ENST00000595758 PTGDRQ13258 359 aa16.16■□□□□ 0.18
LIG1-208ENST00000595758 NCAPH2Q6IBW4 605 aa16.16■□□□□ 0.18
LIG1-208ENST00000595758 CKAP2LQ8IYA6 745 aa16.16■□□□□ 0.18
LIG1-208ENST00000595758 C4orf32Q8N8J7 132 aa16.16■□□□□ 0.18
LIG1-208ENST00000595758 ATP8B4Q8TF62 1192 aa16.16■□□□□ 0.18
LIG1-208ENST00000595758 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.16■□□□□ 0.18
LIG1-208ENST00000595758 TRPC6Q9Y210 931 aa16.16■□□□□ 0.18
LIG1-208ENST00000595758 NRCAMQ92823 1304 aa16.16■□□□□ 0.18
LIG1-208ENST00000595758 POTEB3A0JP26 581 aa16.15■□□□□ 0.18
LIG1-208ENST00000595758 INSRRP14616 1297 aa16.15■□□□□ 0.18
LIG1-208ENST00000595758 RAG1P15918 1043 aa16.15■□□□□ 0.18
LIG1-208ENST00000595758 HOXC8P31273 242 aa16.15■□□□□ 0.18
LIG1-208ENST00000595758 SPIRE1Q08AE8 756 aa16.15■□□□□ 0.18
LIG1-208ENST00000595758 RESTQ13127 1097 aa16.15■□□□□ 0.18
LIG1-208ENST00000595758 HIC1Q14526 733 aa16.15■□□□□ 0.18
LIG1-208ENST00000595758 EPHA7Q15375 998 aa16.15■□□□□ 0.18
LIG1-208ENST00000595758 POTEBQ6S5H4 581 aa16.15■□□□□ 0.18
LIG1-208ENST00000595758 ATP6V0A1Q93050 837 aa16.15■□□□□ 0.18
LIG1-208ENST00000595758 ZSCAN16Q9H4T2 348 aaPredicted RBP16.15■□□□□ 0.18
LIG1-208ENST00000595758 RRN3P2A6NIE6 340 aa16.14■□□□□ 0.17
LIG1-208ENST00000595758 LAD1O00515 517 aa16.14■□□□□ 0.17
LIG1-208ENST00000595758 HBP1O60381 514 aa16.14■□□□□ 0.17
LIG1-208ENST00000595758 ATP4AP20648 1035 aa16.14■□□□□ 0.17
LIG1-208ENST00000595758 GRIK4Q16099 956 aa16.14■□□□□ 0.17
LIG1-208ENST00000595758 UGCGQ16739 394 aa16.14■□□□□ 0.17
LIG1-208ENST00000595758 LMBR1Q8WVP7 490 aa16.14■□□□□ 0.17
LIG1-208ENST00000595758 FAM167AQ96KS9 214 aa16.14■□□□□ 0.17
LIG1-208ENST00000595758 CTAGE1Q96RT6 745 aa16.14■□□□□ 0.17
LIG1-208ENST00000595758 LBHD1Q9BQE6 289 aaPredicted RBP16.14■□□□□ 0.17
LIG1-208ENST00000595758 NOC4LQ9BVI4 516 aaKnown RBP16.14■□□□□ 0.17
LIG1-208ENST00000595758 HIPK3Q9H422 1215 aa16.14■□□□□ 0.17
LIG1-208ENST00000595758 IGSF9BQ9UPX0 1349 aa16.14■□□□□ 0.17
LIG1-208ENST00000595758 TREHO43280 583 aa16.13■□□□□ 0.17
LIG1-208ENST00000595758 ZNF862O60290 1169 aa16.13■□□□□ 0.17
LIG1-208ENST00000595758 TIMP1P01033 207 aa16.13■□□□□ 0.17
LIG1-208ENST00000595758 TECP42680 631 aa16.13■□□□□ 0.17
LIG1-208ENST00000595758 PSMC5P62195 406 aa16.13■□□□□ 0.17
LIG1-208ENST00000595758 IGBP1P78318 339 aa16.13■□□□□ 0.17
LIG1-208ENST00000595758 ADAM17P78536 824 aa16.13■□□□□ 0.17
LIG1-208ENST00000595758 PTK7Q13308 1070 aa16.13■□□□□ 0.17
LIG1-208ENST00000595758 TMEM266Q2M3C6 531 aa16.13■□□□□ 0.17
LIG1-208ENST00000595758 TRMT1LQ7Z2T5 733 aaKnown RBP16.13■□□□□ 0.17
LIG1-208ENST00000595758 BANK1Q8NDB2 785 aa16.13■□□□□ 0.17
LIG1-208ENST00000595758 BBXQ8WY36 941 aaPredicted RBP16.13■□□□□ 0.17
LIG1-208ENST00000595758 PPP1R12CQ9BZL4 782 aa16.13■□□□□ 0.17
LIG1-208ENST00000595758 NRBP2Q9NSY0 501 aa16.13■□□□□ 0.17
LIG1-208ENST00000595758 PCDH10Q9P2E7 1040 aa16.13■□□□□ 0.17
LIG1-208ENST00000595758 DKC1O60832 514 aaKnown RBP eCLIP16.12■□□□□ 0.171e-6■■□□□ 12.5
LIG1-208ENST00000595758 OATP04181 439 aa16.12■□□□□ 0.17
LIG1-208ENST00000595758 P4HBP07237 508 aaKnown RBP16.12■□□□□ 0.17
LIG1-208ENST00000595758 ZSCAN22P10073 491 aaPredicted RBP16.12■□□□□ 0.17
LIG1-208ENST00000595758 ITGB8P26012 769 aa16.12■□□□□ 0.17
LIG1-208ENST00000595758 CYP2C18P33260 490 aa16.12■□□□□ 0.17
LIG1-208ENST00000595758 PRPHP41219 470 aa16.12■□□□□ 0.17
LIG1-208ENST00000595758 QARSP47897 775 aaKnown RBP16.12■□□□□ 0.17
LIG1-208ENST00000595758 PRKCEQ02156 737 aa16.12■□□□□ 0.17
LIG1-208ENST00000595758 BFSP2Q13515 415 aa16.12■□□□□ 0.17
LIG1-208ENST00000595758 ZNF484Q5JVG2 852 aa16.12■□□□□ 0.17
LIG1-208ENST00000595758 PRPF38BQ5VTL8 546 aaKnown RBP16.12■□□□□ 0.17
LIG1-208ENST00000595758 FOXD4L5Q5VV16 416 aaPredicted RBP16.12■□□□□ 0.17
LIG1-208ENST00000595758 FAM173BQ6P4H8 233 aa16.12■□□□□ 0.17
LIG1-208ENST00000595758 SERINC5Q86VE9 423 aa16.12■□□□□ 0.17
LIG1-208ENST00000595758 CCDC155Q8N6L0 562 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms