RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 FAM20AQ96MK3 541 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 UIMC1Q96RL1 719 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 PCYT2Q99447 389 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 KCNMB3Q9NPA1 279 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 SMC3Q9UQE7 1217 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 PCDHA10Q9Y5I2 948 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 SCN5AQ14524 2016 aa13.45□□□□□ -0.26
LIG3-213ENST00000590630 PSAPP07602 524 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 MARK3P27448 753 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 GJB2P29033 226 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 JAK3P52333 1124 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 RBL2Q08999 1139 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 PPFIA1Q13136 1202 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 CUL4AQ13619 759 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 GNL2Q13823 731 aaKnown RBP13.44□□□□□ -0.26
LIG3-213ENST00000590630 HIC1Q14526 733 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 HABP4Q5JVS0 413 aaKnown RBP13.44□□□□□ -0.26
LIG3-213ENST00000590630 SERINC5Q86VE9 423 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 NOSTRINQ8IVI9 506 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 CCDC60Q8IWA6 550 aaPredicted RBP13.44□□□□□ -0.26
LIG3-213ENST00000590630 TDHQ8IZJ6 230 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 RDM1Q8NG50 284 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 LMBR1Q8WVP7 490 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 WNT8AQ9H1J5 351 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 ZNF302Q9NR11 478 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 DISC1Q9NRI5 854 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 SETD4Q9NVD3 440 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 SAMM50Q9Y512 469 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 SZT2Q5T011 3432 aa13.44□□□□□ -0.26
LIG3-213ENST00000590630 UMODL1Q5DID0 1318 aa13.43□□□□□ -0.26
LIG3-213ENST00000590630 CSF2RAP15509 400 aa13.43□□□□□ -0.26
LIG3-213ENST00000590630 U2AF2P26368 475 aaKnown RBP eCLIP13.43□□□□□ -0.267e-8■■■□□ 18.4
LIG3-213ENST00000590630 ADAM17P78536 824 aa13.43□□□□□ -0.26
LIG3-213ENST00000590630 ZNF200P98182 395 aaPredicted RBP13.43□□□□□ -0.26
LIG3-213ENST00000590630 SWSAP1Q6NVH7 229 aa13.43□□□□□ -0.26
LIG3-213ENST00000590630 PDXDC2PQ6P474 469 aa13.43□□□□□ -0.26
LIG3-213ENST00000590630 B3GNT9Q6UX72 402 aa13.43□□□□□ -0.26
LIG3-213ENST00000590630 SLFN12Q8IYM2 578 aa13.43□□□□□ -0.26
LIG3-213ENST00000590630 RETREG2Q8NC44 543 aa13.43□□□□□ -0.26
LIG3-213ENST00000590630 DHX38Q92620 1227 aaKnown RBP13.43□□□□□ -0.26
LIG3-213ENST00000590630 GJA10Q969M2 543 aa13.43□□□□□ -0.26
LIG3-213ENST00000590630 TRPC6Q9Y210 931 aa13.43□□□□□ -0.26
LIG3-213ENST00000590630 MAFBQ9Y5Q3 323 aaPredicted RBP13.43□□□□□ -0.26
LIG3-213ENST00000590630 EVPLQ92817 2033 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 IGSF9BQ9UPX0 1349 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 POTEB3A0JP26 581 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 RRN3P2A6NIE6 340 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 K7ELQ4 463 aaPredicted RBP13.42□□□□□ -0.26
LIG3-213ENST00000590630 TREHO43280 583 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 CHMP2AO43633 222 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 MARCH6O60337 910 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 NEMFO60524 1076 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 CAND2O75155 1236 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 BAG4O95429 457 aaKnown RBP13.42□□□□□ -0.26
LIG3-213ENST00000590630 PARNO95453 639 aaKnown RBP13.42□□□□□ -0.26
LIG3-213ENST00000590630 PFKMP08237 780 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 SELPP16109 830 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 RFC2P35250 354 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 TRAPPC10P48553 1259 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 CCL23P55773 120 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 PPP2R5CQ13362 524 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 ORC2Q13416 577 aaPredicted RBP13.42□□□□□ -0.26
LIG3-213ENST00000590630 PLCB4Q15147 1175 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 GRIK4Q16099 956 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 TAF2Q6P1X5 1199 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 POTEBQ6S5H4 581 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 POTEDQ86YR6 584 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 ATP8B4Q8TF62 1192 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 HAS1Q92839 578 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 SNX21Q969T3 373 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 INTS4Q96HW7 963 aaKnown RBP13.42□□□□□ -0.26
LIG3-213ENST00000590630 UNC45AQ9H3U1 944 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 IL23AQ9NPF7 189 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 TUBE1Q9UJT0 475 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 TET1Q8NFU7 2136 aa13.42□□□□□ -0.26
LIG3-213ENST00000590630 MBLAC1A4D2B0 266 aaPredicted RBP13.41□□□□□ -0.26
LIG3-213ENST00000590630 H3BQV1 296 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 HBP1O60381 514 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 RPLP2P05387 115 aaKnown RBP13.41□□□□□ -0.26
LIG3-213ENST00000590630 IQCF3P0C7M6 154 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 CKBP12277 381 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 INSRRP14616 1297 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 EPHB4P54760 987 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 CALCRLQ16602 461 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 TRIM71Q2Q1W2 868 aaKnown RBP13.41□□□□□ -0.26
LIG3-213ENST00000590630 PSRC1Q6PGN9 363 aaPredicted RBP13.41□□□□□ -0.26
LIG3-213ENST00000590630 LRRC8DQ7L1W4 858 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 MIER3Q7Z3K6 550 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 CKAP2LQ8IYA6 745 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 RPUSD2Q8IZ73 545 aaKnown RBP13.41□□□□□ -0.26
LIG3-213ENST00000590630 BBXQ8WY36 941 aaPredicted RBP13.41□□□□□ -0.26
LIG3-213ENST00000590630 SCLYQ96I15 445 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 FAM167AQ96KS9 214 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 GABBR1Q9UBS5 961 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 VAV3Q9UKW4 847 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 NOL7Q9UMY1 257 aaKnown RBP13.41□□□□□ -0.26
LIG3-213ENST00000590630 COL1A2P08123 1366 aa13.41□□□□□ -0.26
LIG3-213ENST00000590630 KIF28PB7ZC32 967 aa13.4□□□□□ -0.26
LIG3-213ENST00000590630 WNT7AO00755 349 aa13.4□□□□□ -0.26
LIG3-213ENST00000590630 PDCP20941 246 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms