RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 PPFIA1Q13136 1202 aa17.25■□□□□ 0.35
CLIP3-202ENST00000585466 PLCB4Q15147 1175 aa17.25■□□□□ 0.35
CLIP3-202ENST00000585466 FAM26DQ5JW98 314 aa17.25■□□□□ 0.35
CLIP3-202ENST00000585466 CNKSR3Q6P9H4 555 aa17.25■□□□□ 0.35
CLIP3-202ENST00000585466 RPAINQ86UA6 219 aa17.25■□□□□ 0.35
CLIP3-202ENST00000585466 FAM177A1Q8N128 213 aaPredicted RBP17.25■□□□□ 0.35
CLIP3-202ENST00000585466 ZBTB10Q96DT7 871 aa17.25■□□□□ 0.35
CLIP3-202ENST00000585466 KIF2CQ99661 725 aa17.25■□□□□ 0.35
CLIP3-202ENST00000585466 FTOQ9C0B1 505 aaKnown RBP eCLIP17.25■□□□□ 0.35
CLIP3-202ENST00000585466 SLKQ9H2G2 1235 aaPredicted RBP17.25■□□□□ 0.35
CLIP3-202ENST00000585466 NKX2-4Q9H2Z4 354 aa17.25■□□□□ 0.35
CLIP3-202ENST00000585466 GJB4Q9NTQ9 266 aa17.25■□□□□ 0.35
CLIP3-202ENST00000585466 MYH9P35579 1960 aaKnown RBP17.25■□□□□ 0.35
CLIP3-202ENST00000585466 RSPH10B2B2RC85 870 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 ARHGEF15O94989 841 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 RSPH10BP0C881 870 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 ACTN1P12814 892 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 ZNF76P36508 570 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 NLRP5P59047 1200 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 SETQ01105 290 aaPredicted RBP17.24■□□□□ 0.35
CLIP3-202ENST00000585466 RAB30Q15771 203 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 GRIK4Q16099 956 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 PRR16Q569H4 304 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 PLPPR4Q7Z2D5 763 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 CCDC60Q8IWA6 550 aaPredicted RBP17.24■□□□□ 0.35
CLIP3-202ENST00000585466 BLIDQ8IZY5 108 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 NECAB1Q8N987 351 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 MYLIPQ8WY64 445 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 GLG1Q92896 1179 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 GTF3C6Q969F1 213 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 PHF20Q9BVI0 1012 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 PCDHA11Q9Y5I1 949 aa17.24■□□□□ 0.35
CLIP3-202ENST00000585466 LOXHD1Q8IVV2 1947 aa17.23■□□□□ 0.35
CLIP3-202ENST00000585466 DDX39AO00148 427 aaKnown RBP17.23■□□□□ 0.35
CLIP3-202ENST00000585466 GNAT1P11488 350 aa17.23■□□□□ 0.35
CLIP3-202ENST00000585466 INSRRP14616 1297 aa17.23■□□□□ 0.35
CLIP3-202ENST00000585466 ATP4AP20648 1035 aa17.23■□□□□ 0.35
CLIP3-202ENST00000585466 USP11P51784 963 aa17.23■□□□□ 0.35
CLIP3-202ENST00000585466 DEFB103AP81534 67 aa17.23■□□□□ 0.35
CLIP3-202ENST00000585466 MGAT3Q09327 533 aa17.23■□□□□ 0.35
CLIP3-202ENST00000585466 ANKRD1Q15327 319 aa17.23■□□□□ 0.35
CLIP3-202ENST00000585466 PLEKHG4Q58EX7 1191 aa17.23■□□□□ 0.35
CLIP3-202ENST00000585466 PHOSPHO2Q8TCD6 241 aa17.23■□□□□ 0.35
CLIP3-202ENST00000585466 TBCKQ8TEA7 893 aa17.23■□□□□ 0.35
CLIP3-202ENST00000585466 MBOAT7Q96N66 472 aa17.23■□□□□ 0.35
CLIP3-202ENST00000585466 SLC9A7Q96T83 725 aa17.23■□□□□ 0.35
CLIP3-202ENST00000585466 KCNJ14Q9UNX9 436 aa17.23■□□□□ 0.35
CLIP3-202ENST00000585466 CYP3A7-CYP3A51PA0A087WV96 503 aa17.22■□□□□ 0.35
CLIP3-202ENST00000585466 ZBTB42B2RXF5 422 aa17.22■□□□□ 0.35
CLIP3-202ENST00000585466 MSH4O15457 936 aa17.22■□□□□ 0.35
CLIP3-202ENST00000585466 CDKL5O76039 1030 aa17.22■□□□□ 0.35
CLIP3-202ENST00000585466 CHRNA1P02708 482 aa17.22■□□□□ 0.35
CLIP3-202ENST00000585466 CTSHP09668 335 aa17.22■□□□□ 0.35
CLIP3-202ENST00000585466 CYP3A7P24462 503 aa17.22■□□□□ 0.35
CLIP3-202ENST00000585466 STAT5BP51692 787 aa17.22■□□□□ 0.35
CLIP3-202ENST00000585466 GALNT17Q6IS24 598 aa17.22■□□□□ 0.35
CLIP3-202ENST00000585466 CPLX2Q6PUV4 134 aaKnown RBP17.22■□□□□ 0.35
CLIP3-202ENST00000585466 TMCO2Q7Z6W1 182 aaPredicted RBP17.22■□□□□ 0.35
CLIP3-202ENST00000585466 HERC6Q8IVU3 1022 aa17.22■□□□□ 0.35
CLIP3-202ENST00000585466 TRAPPC12Q8WVT3 735 aa17.22■□□□□ 0.35
CLIP3-202ENST00000585466 ZNF577Q9BSK1 485 aa17.22■□□□□ 0.35
CLIP3-202ENST00000585466 TUBE1Q9UJT0 475 aa17.22■□□□□ 0.35
CLIP3-202ENST00000585466 PRUNE2Q8WUY3 3088 aa17.22■□□□□ 0.35
CLIP3-202ENST00000585466 TDP2O95551 362 aa17.21■□□□□ 0.35
CLIP3-202ENST00000585466 NEK4P51957 841 aa17.21■□□□□ 0.35
CLIP3-202ENST00000585466 ZNF746Q6NUN9 644 aaPredicted RBP17.21■□□□□ 0.35
CLIP3-202ENST00000585466 TAF2Q6P1X5 1199 aa17.21■□□□□ 0.35
CLIP3-202ENST00000585466 B3GNT9Q6UX72 402 aa17.21■□□□□ 0.35
CLIP3-202ENST00000585466 NSUN7Q8NE18 718 aaKnown RBP17.21■□□□□ 0.35
CLIP3-202ENST00000585466 DBF4BQ8NFT6 615 aa17.21■□□□□ 0.35
CLIP3-202ENST00000585466 OXER1Q8TDS5 423 aa17.21■□□□□ 0.35
CLIP3-202ENST00000585466 SLC5A5Q92911 643 aa17.21■□□□□ 0.35
CLIP3-202ENST00000585466 GJA10Q969M2 543 aa17.21■□□□□ 0.35
CLIP3-202ENST00000585466 AZI2Q9H6S1 392 aa17.21■□□□□ 0.35
CLIP3-202ENST00000585466 TBC1D22BQ9NU19 505 aa17.21■□□□□ 0.35
CLIP3-202ENST00000585466 MSRAQ9UJ68 235 aa17.21■□□□□ 0.35
CLIP3-202ENST00000585466 EVPLQ92817 2033 aa17.21■□□□□ 0.35
CLIP3-202ENST00000585466 TRANK1O15050 2925 aa17.2■□□□□ 0.34
CLIP3-202ENST00000585466 ABHD14A-ACY1A0A1B0GW23 586 aa17.2■□□□□ 0.34
CLIP3-202ENST00000585466 RRN3P2A6NIE6 340 aa17.2■□□□□ 0.34
CLIP3-202ENST00000585466 EIF5BO60841 1220 aaKnown RBP17.2■□□□□ 0.34
CLIP3-202ENST00000585466 ADGRE1Q14246 886 aa17.2■□□□□ 0.34
CLIP3-202ENST00000585466 Q4G0T1 1027 aa17.2■□□□□ 0.34
CLIP3-202ENST00000585466 EARS2Q5JPH6 523 aaKnown RBP17.2■□□□□ 0.34
CLIP3-202ENST00000585466 SPRED2Q7Z698 418 aa17.2■□□□□ 0.34
CLIP3-202ENST00000585466 TNFRSF25Q93038 417 aa17.2■□□□□ 0.34
CLIP3-202ENST00000585466 MAFBQ9Y5Q3 323 aaPredicted RBP17.2■□□□□ 0.34
CLIP3-202ENST00000585466 UNC80Q8N2C7 3258 aa17.2■□□□□ 0.34
CLIP3-202ENST00000585466 IGSF9BQ9UPX0 1349 aa17.2■□□□□ 0.34
CLIP3-202ENST00000585466 SPTBN5Q9NRC6 3674 aaKnown RBP17.19■□□□□ 0.34
CLIP3-202ENST00000585466 POTEB3A0JP26 581 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 JAK2O60674 1132 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 CA3P07451 260 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 SLC26A2P50443 739 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 IGBP1P78318 339 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 KRT76Q01546 638 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 SWSAP1Q6NVH7 229 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 POTEBQ6S5H4 581 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 MOXD1Q6UVY6 613 aa17.19■□□□□ 0.34
CLIP3-202ENST00000585466 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms