RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 ZSCAN10Q96SZ4 725 aaPredicted RBP10.46□□□□□ -0.73
CCDC40-212ENST00000574799 MYH4Q9Y623 1939 aa10.46□□□□□ -0.73
CCDC40-212ENST00000574799 UPP2O95045 317 aa10.46□□□□□ -0.73
CCDC40-212ENST00000574799 HSD17B3P37058 310 aa10.46□□□□□ -0.73
CCDC40-212ENST00000574799 RANBP1P43487 201 aa10.46□□□□□ -0.73
CCDC40-212ENST00000574799 DTHD1Q6ZMT9 781 aa10.46□□□□□ -0.73
CCDC40-212ENST00000574799 CCDC155Q8N6L0 562 aa10.46□□□□□ -0.73
CCDC40-212ENST00000574799 PSMD1Q99460 953 aa10.46□□□□□ -0.73
CCDC40-212ENST00000574799 TRIM4Q9C037 500 aa10.46□□□□□ -0.73
CCDC40-212ENST00000574799 TMBIM4Q9HC24 238 aa10.46□□□□□ -0.73
CCDC40-212ENST00000574799 CNTNAP5Q8WYK1 1306 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 KRIT1O00522 736 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 RGS16O15492 202 aaPredicted RBP10.46□□□□□ -0.74
CCDC40-212ENST00000574799 RAD51CO43502 376 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 ORC4O43929 436 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 MARCH6O60337 910 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 SERPINB2P05120 415 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 RHBDL3P58872 404 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 TRADDQ15628 312 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 CCDC6Q16204 474 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 CDC37Q16543 378 aaPredicted RBP10.46□□□□□ -0.74
CCDC40-212ENST00000574799 SBK1Q52WX2 424 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 SOGA3Q5TF21 947 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 DAAM2Q86T65 1068 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 CNBD1Q8NA66 436 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 ANKRD2Q9GZV1 360 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 RNF14Q9UBS8 474 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 XDHP47989 1333 aa10.46□□□□□ -0.74
CCDC40-212ENST00000574799 COL4A5P29400 1685 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 TRAPPC3O43617 180 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 SEMA3FQ13275 785 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 SRBD1Q8N5C6 995 aaKnown RBP10.45□□□□□ -0.74
CCDC40-212ENST00000574799 CCDC26Q8TAB7 109 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 RNF41Q9H4P4 317 aaPredicted RBP10.45□□□□□ -0.74
CCDC40-212ENST00000574799 THAP9Q9H5L6 903 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 KCNK9Q9NPC2 374 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 TCP11L1Q9NUJ3 509 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 UTP11Q9Y3A2 253 aaKnown RBP10.45□□□□□ -0.74
CCDC40-212ENST00000574799 LRRC10BA6NIK2 292 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 SLC1A4P43007 532 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 RCAN1P53805 252 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 TRAF1Q13077 416 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 SLC27A3Q5K4L6 730 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 IFIT1BQ5T764 474 aaKnown RBP10.45□□□□□ -0.74
CCDC40-212ENST00000574799 ARMC3Q5W041 872 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 AGAP11Q8TF27 550 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 DDX47Q9H0S4 455 aaKnown RBP10.45□□□□□ -0.74
CCDC40-212ENST00000574799 G3BP2Q9UN86 482 aaKnown RBP10.45□□□□□ -0.74
CCDC40-212ENST00000574799 KIF13BQ9NQT8 1826 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 M0R2N6 131 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 FGFR1OPO95684 399 aaKnown RBP10.45□□□□□ -0.74
CCDC40-212ENST00000574799 SRGNP10124 158 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 GBP1P32455 592 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 SLCO1A2P46721 670 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 SPRED3Q2MJR0 410 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 FAM47AQ5JRC9 791 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 ADAT2Q7Z6V5 191 aaKnown RBP10.45□□□□□ -0.74
CCDC40-212ENST00000574799 CCDC25Q86WR0 208 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 DYNLL2Q96FJ2 89 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 PHF20Q9BVI0 1012 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 GGA2Q9UJY4 613 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 PNMA2Q9UL42 364 aa10.45□□□□□ -0.74
CCDC40-212ENST00000574799 LRRC53A6NM62 1247 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 C12orf60Q5U649 245 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 CCDC84Q86UT8 332 aaPredicted RBP10.44□□□□□ -0.74
CCDC40-212ENST00000574799 COL23A1Q86Y22 540 aaPredicted RBP10.44□□□□□ -0.74
CCDC40-212ENST00000574799 CERS5Q8N5B7 392 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 XPO6Q96QU8 1125 aaKnown RBP10.44□□□□□ -0.74
CCDC40-212ENST00000574799 ZHX3Q9H4I2 956 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 CFAP73A6NFT4 308 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 NOVP48745 357 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 CTCFP49711 727 aaPredicted RBP10.44□□□□□ -0.74
CCDC40-212ENST00000574799 XRCC4Q13426 336 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 TXNRD1Q16881 649 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 SLC4A8Q2Y0W8 1093 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 MEX3CQ5U5Q3 659 aaKnown RBP10.44□□□□□ -0.74
CCDC40-212ENST00000574799 KRT27Q7Z3Y8 459 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 FAM228AQ86W67 206 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 SPATA20Q8TB22 786 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 TBC1D16Q8TBP0 767 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 TRIM7Q9C029 511 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 CNOT10Q9H9A5 744 aaKnown RBP10.44□□□□□ -0.74
CCDC40-212ENST00000574799 DAPK3O43293 454 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 ATP2A2P16615 1042 aaKnown RBP10.44□□□□□ -0.74
CCDC40-212ENST00000574799 FECHP22830 423 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 PMS1P54277 932 aaKnown RBP10.44□□□□□ -0.74
CCDC40-212ENST00000574799 SESN3P58005 492 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 DENND2CQ68D51 928 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 RNF10Q8N5U6 811 aaKnown RBP10.44□□□□□ -0.74
CCDC40-212ENST00000574799 ANKRD42Q8N9B4 389 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 ESR2Q92731 530 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 P2RX5Q93086 422 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 ECT2Q9H8V3 914 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 CD209Q9NNX6 404 aa10.44□□□□□ -0.74
CCDC40-212ENST00000574799 GNAT1P11488 350 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 KRT13P13646 458 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 PPP4CP60510 307 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 IL17AQ16552 155 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 TSNAXIP1Q2TAA8 658 aa10.43□□□□□ -0.74
CCDC40-212ENST00000574799 CCDC38Q502W7 563 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms