RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.18■□□□□ 0.02
CLK3-218ENST00000566926 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.18■□□□□ 0.02
CLK3-218ENST00000566926 H3BQV1 296 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 SOX1O00570 391 aaPredicted RBP15.18■□□□□ 0.02
CLK3-218ENST00000566926 JAK2O60674 1132 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 CAND2O75155 1236 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 ATG7O95352 703 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 ZSCAN22P10073 491 aaPredicted RBP15.18■□□□□ 0.02
CLK3-218ENST00000566926 ACRP10323 421 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 CKBP12277 381 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 PTMSP20962 102 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 STAT5BP51692 787 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 KRT76Q01546 638 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 NPY5RQ15761 445 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 FAM160B1Q5W0V3 765 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 ZNF746Q6NUN9 644 aaPredicted RBP15.18■□□□□ 0.02
CLK3-218ENST00000566926 MIS18BP1Q6P0N0 1132 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 LRRC8DQ7L1W4 858 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 C16orf59Q7L2K0 433 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 SERINC5Q86VE9 423 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 HERVK_113Q902F9 699 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 LRCH3Q96II8 777 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 CTAGE1Q96RT6 745 aa15.18■□□□□ 0.02
CLK3-218ENST00000566926 CYP3A7-CYP3A51PA0A087WV96 503 aa15.17■□□□□ 0.02
CLK3-218ENST00000566926 RRN3P2A6NIE6 340 aa15.17■□□□□ 0.02
CLK3-218ENST00000566926 DDX39AO00148 427 aaKnown RBP15.17■□□□□ 0.02
CLK3-218ENST00000566926 RPLP2P05387 115 aaKnown RBP15.17■□□□□ 0.02
CLK3-218ENST00000566926 FDPSP14324 419 aaKnown RBP15.17■□□□□ 0.02
CLK3-218ENST00000566926 CYP3A7P24462 503 aa15.17■□□□□ 0.02
CLK3-218ENST00000566926 KRT2P35908 639 aa15.17■□□□□ 0.02
CLK3-218ENST00000566926 ZNF200P98182 395 aaPredicted RBP15.17■□□□□ 0.02
CLK3-218ENST00000566926 Q4G0T1 1027 aa15.17■□□□□ 0.02
CLK3-218ENST00000566926 DEFB128Q7Z7B8 93 aa15.17■□□□□ 0.02
CLK3-218ENST00000566926 SMAP1Q8IYB5 467 aaPredicted RBP15.17■□□□□ 0.02
CLK3-218ENST00000566926 DHX38Q92620 1227 aaKnown RBP15.17■□□□□ 0.02
CLK3-218ENST00000566926 RIT2Q99578 217 aa15.17■□□□□ 0.02
CLK3-218ENST00000566926 FTOQ9C0B1 505 aaKnown RBP eCLIP15.17■□□□□ 0.02
CLK3-218ENST00000566926 SETD4Q9NVD3 440 aa15.17■□□□□ 0.02
CLK3-218ENST00000566926 TELO2Q9Y4R8 837 aa15.17■□□□□ 0.02
CLK3-218ENST00000566926 GOLGA6L22H0YM25 854 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 BACH1O14867 736 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 DHX15O43143 795 aaKnown RBP15.16■□□□□ 0.02
CLK3-218ENST00000566926 TREHO43280 583 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 PSAPP07602 524 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 GCFC2P16383 781 aaKnown RBP15.16■□□□□ 0.02
CLK3-218ENST00000566926 MARK3P27448 753 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 PPFIA1Q13136 1202 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 RASIP1Q5U651 963 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 FAM109BQ6ICB4 259 aaPredicted RBP15.16■□□□□ 0.02
CLK3-218ENST00000566926 TAF2Q6P1X5 1199 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 ABHD15Q6UXT9 468 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 NEK8Q86SG6 692 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 RSPH3Q86UC2 560 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 LMBR1Q8WVP7 490 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 LENG9Q96B70 501 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 C8orf76Q96K31 380 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 TEKT3Q9BXF9 490 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 ZSCAN16Q9H4T2 348 aaPredicted RBP15.16■□□□□ 0.02
CLK3-218ENST00000566926 MTMR6Q9Y217 621 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 PCDHA10Q9Y5I2 948 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 GBF1Q92538 1859 aa15.16■□□□□ 0.02
CLK3-218ENST00000566926 LOXHD1Q8IVV2 1947 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 IGKV6D-21A0A0A0MT36 114 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 VPS37CA5D8V6 355 aaPredicted RBP15.15■□□□□ 0.02
CLK3-218ENST00000566926 WDR64B1ANS9 1081 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 MSH4O15457 936 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 GAS7O60861 476 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 SFNP31947 248 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 THPOP40225 353 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 ADAM17P78536 824 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 HIC1Q14526 733 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 SAFBQ15424 915 aaKnown RBP eCLIP15.15■□□□□ 0.02
CLK3-218ENST00000566926 GRIK4Q16099 956 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 INF2Q27J81 1249 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 TRIM71Q2Q1W2 868 aaKnown RBP15.15■□□□□ 0.02
CLK3-218ENST00000566926 OTOP2Q7RTS6 562 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 FBXO18Q8NFZ0 1043 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 PCYT2Q99447 389 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 ZNF302Q9NR11 478 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 TRPC6Q9Y210 931 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 SAMM50Q9Y512 469 aa15.15■□□□□ 0.02
CLK3-218ENST00000566926 POTEB3A0JP26 581 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 DDX11L8A8MPP1 907 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 ZBBXA8MT70 800 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 RSPH10B2B2RC85 870 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 HBP1O60381 514 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 BAIAP3O94812 1187 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 CCNE2O96020 404 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 F13A1P00488 732 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 MMP1P03956 469 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 RSPH10BP0C881 870 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 JAK3P52333 1124 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 PKP1Q13835 747 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 LETM2Q2VYF4 491 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 ZNF618Q5T7W0 954 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 LRCH2Q5VUJ6 765 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 PPP4R3AQ6IN85 833 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 PDXDC2PQ6P474 469 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 POTEBQ6S5H4 581 aa15.14■□□□□ 0.01
CLK3-218ENST00000566926 PIK3AP1Q6ZUJ8 805 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms