RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 EXOC7Q9UPT5 735 aa8.32□□□□□ -1.08
VPS39-204ENST00000561818 LUC7L2Q9Y383 392 aaKnown RBP8.32□□□□□ -1.08
VPS39-204ENST00000561818 A0A0G2JLL6 359 aaPredicted RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 POTEB3A0JP26 581 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 GTPBP10A4D1E9 387 aaKnown RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 POTECB2RU33 542 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 DYNC1I1O14576 645 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 KIAA0391O15091 583 aaKnown RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 GAS2O43903 313 aaKnown RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 N4BP1O75113 896 aaKnown RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 HOXC6P09630 235 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 CCDC172P0C7W6 258 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 EPB41P11171 864 aaKnown RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 CD44P16070 742 aaKnown RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 STAT3P40763 770 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 ZNF131P52739 623 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 SMTNP53814 917 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 RTP1P59025 263 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 PSMC5P62195 406 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 RPS6P62753 249 aaKnown RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 CCNA1P78396 465 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 ZBED6P86452 979 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 TBC1D8BQ0IIM8 1120 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 CETN1Q12798 172 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 PGM5Q15124 567 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 SYCP1Q15431 976 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 KNOP1Q1ED39 458 aaKnown RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 SNRNP48Q6IEG0 339 aaKnown RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 POTEBQ6S5H4 581 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 B3GNT9Q6UX72 402 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 ZNF662Q6ZS27 426 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 FRMD5Q7Z6J6 570 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 PRRT2Q7Z6L0 340 aaPredicted RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 RIOX2Q8IUF8 465 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 ZC3H3Q8IXZ2 948 aaKnown RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 KIAA0895Q8NCT3 520 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 MCPH1Q8NEM0 835 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 OR8K1Q8NGG5 319 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 TRPM4Q8TD43 1214 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 SYN2Q92777 582 aaPredicted RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 KIFAP3Q92845 792 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 KCNN1Q92952 543 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 FAM81BQ96LP2 452 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 INPP4AQ96PE3 977 aaPredicted RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 MAP7D2Q96T17 732 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 PDCD2LQ9BRP1 358 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 SYT17Q9BSW7 474 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 KCNF1Q9H3M0 494 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 ST6GALNAC4Q9H4F1 302 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 AGO4Q9HCK5 861 aaKnown RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 KCNH7Q9NS40 1196 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 ZNF214Q9UL59 606 aaPredicted RBP8.31□□□□□ -1.08
VPS39-204ENST00000561818 CAPN11Q9UMQ6 739 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 AGTPBP1Q9UPW5 1226 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 KCNH4Q9UQ05 1017 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 GDAQ9Y2T3 454 aa8.31□□□□□ -1.08
VPS39-204ENST00000561818 ATP8B3O60423 1300 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 SBF1O95248 1867 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 GLTPD2A6NH11 291 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 PES1O00541 588 aaKnown RBP8.3□□□□□ -1.08
VPS39-204ENST00000561818 IRF6O14896 467 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 ADAMTS3O15072 1205 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 MAPK13O15264 365 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 EDIL3O43854 480 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 MED24O75448 989 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 EIF3JO75822 258 aaKnown RBP8.3□□□□□ -1.08
VPS39-204ENST00000561818 PSAPP07602 524 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 SPATA31C1P0DKV0 1188 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 TNNT1P13805 278 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 ICAM3P32942 547 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 EPHX2P34913 555 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 GTF2F1P35269 517 aaKnown RBP eCLIP8.3□□□□□ -1.08
VPS39-204ENST00000561818 HMGCS2P54868 508 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 STX17P56962 302 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 STK4Q13043 487 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 SNAPC2Q13487 334 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 IRF5Q13568 498 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 VGLL4Q14135 290 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 PPP2R5AQ15172 486 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 STXBP2Q15833 593 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 SHROOM1Q2M3G4 852 aaPredicted RBP8.3□□□□□ -1.08
VPS39-204ENST00000561818 CCDC144BQ3MJ40 725 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 CCDC40Q4G0X9 1142 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 C9orf131Q5VYM1 1079 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 CEP135Q66GS9 1140 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 MIS18BP1Q6P0N0 1132 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 ARMCX5Q6P1M9 558 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 DYMQ7RTS9 669 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 VSIG10LQ86VR7 867 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 FAM178BQ8IXR5 827 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 CPXCR1Q8N123 301 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 SHCBP1Q8NEM2 672 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 STAMQ92783 540 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 FAM167AQ96KS9 214 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 CALR3Q96L12 384 aaKnown RBP8.3□□□□□ -1.08
VPS39-204ENST00000561818 AGBL1Q96MI9 1066 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 JPH2Q9BR39 696 aaPredicted RBP8.3□□□□□ -1.08
VPS39-204ENST00000561818 LXNQ9BS40 222 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 BHMT2Q9H2M3 363 aa8.3□□□□□ -1.08
VPS39-204ENST00000561818 MROH8Q9H579 483 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms