RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 NLGN4XQ8N0W4 816 aa7.29□□□□□ -1.24
VPS13C-208ENST00000559119 CARD11Q9BXL7 1154 aa7.29□□□□□ -1.24
VPS13C-208ENST00000559119 SLC39A2Q9NP94 309 aa7.29□□□□□ -1.24
VPS13C-208ENST00000559119 CCDC9Q9Y3X0 531 aaKnown RBP7.29□□□□□ -1.24
VPS13C-208ENST00000559119 TRAF6Q9Y4K3 522 aa7.29□□□□□ -1.24
VPS13C-208ENST00000559119 ASXL2Q76L83 1435 aa7.28□□□□□ -1.24
VPS13C-208ENST00000559119 SUV39H1O43463 412 aa7.28□□□□□ -1.24
VPS13C-208ENST00000559119 TCTN3Q6NUS6 607 aa7.28□□□□□ -1.24
VPS13C-208ENST00000559119 EP400NLQ6ZTU2 488 aa7.28□□□□□ -1.24
VPS13C-208ENST00000559119 MTDHQ86UE4 582 aaKnown RBP7.28□□□□□ -1.24
VPS13C-208ENST00000559119 ZFPM1Q8IX07 1006 aa7.28□□□□□ -1.24
VPS13C-208ENST00000559119 ZNF669Q96BR6 464 aaPredicted RBP7.28□□□□□ -1.24
VPS13C-208ENST00000559119 SPATA9Q9BWV2 254 aa7.28□□□□□ -1.24
VPS13C-208ENST00000559119 ARHGAP28Q9P2N2 729 aa7.28□□□□□ -1.24
VPS13C-208ENST00000559119 ZFR2Q9UPR6 939 aaKnown RBP7.28□□□□□ -1.24
VPS13C-208ENST00000559119 AQP7O14520 342 aa7.27□□□□□ -1.25
VPS13C-208ENST00000559119 FOXS1O43638 330 aa7.27□□□□□ -1.25
VPS13C-208ENST00000559119 CUTAO60888 179 aa7.27□□□□□ -1.25
VPS13C-208ENST00000559119 ZNF888P0CJ79 500 aaPredicted RBP7.27□□□□□ -1.25
VPS13C-208ENST00000559119 POLD1P28340 1107 aa7.27□□□□□ -1.25
VPS13C-208ENST00000559119 ACVRL1P37023 503 aa7.27□□□□□ -1.25
VPS13C-208ENST00000559119 RAC3P60763 192 aa7.27□□□□□ -1.25
VPS13C-208ENST00000559119 DBPQ10586 325 aaPredicted RBP7.27□□□□□ -1.25
VPS13C-208ENST00000559119 PRKD1Q15139 912 aaPredicted RBP7.27□□□□□ -1.25
VPS13C-208ENST00000559119 TAX1BP1Q86VP1 789 aa7.27□□□□□ -1.25
VPS13C-208ENST00000559119 SH3RF2Q8TEC5 729 aa7.27□□□□□ -1.25
VPS13C-208ENST00000559119 NEIL1Q96FI4 390 aaPredicted RBP7.27□□□□□ -1.25
VPS13C-208ENST00000559119 IPO9Q96P70 1041 aaKnown RBP7.27□□□□□ -1.25
VPS13C-208ENST00000559119 CDC6Q99741 560 aa7.27□□□□□ -1.25
VPS13C-208ENST00000559119 MRIQ9BWK5 157 aa7.27□□□□□ -1.25
VPS13C-208ENST00000559119 RIC8BQ9NVN3 520 aa7.27□□□□□ -1.25
VPS13C-208ENST00000559119 PTPN22Q9Y2R2 807 aa7.27□□□□□ -1.25
VPS13C-208ENST00000559119 ESYT3A0FGR9 886 aa7.26□□□□□ -1.25
VPS13C-208ENST00000559119 U2SURPO15042 1029 aaKnown RBP7.26□□□□□ -1.25
VPS13C-208ENST00000559119 PTPN1P18031 435 aaKnown RBP7.26□□□□□ -1.25
VPS13C-208ENST00000559119 GPR19Q15760 415 aa7.26□□□□□ -1.25
VPS13C-208ENST00000559119 ARHGAP36Q6ZRI8 547 aa7.26□□□□□ -1.25
VPS13C-208ENST00000559119 CATSPERZQ9NTU4 200 aa7.26□□□□□ -1.25
VPS13C-208ENST00000559119 SRPK3Q9UPE1 567 aa7.26□□□□□ -1.25
VPS13C-208ENST00000559119 TCRBV5S4A2TA0A5A2 114 aa7.25□□□□□ -1.25
VPS13C-208ENST00000559119 STK10O94804 968 aaKnown RBP7.25□□□□□ -1.25
VPS13C-208ENST00000559119 SLPIP03973 132 aa7.25□□□□□ -1.25
VPS13C-208ENST00000559119 MAMDC2Q7Z304 686 aaPredicted RBP7.25□□□□□ -1.25
VPS13C-208ENST00000559119 SCUBE1Q8IWY4 988 aa7.25□□□□□ -1.25
VPS13C-208ENST00000559119 CKAP2LQ8IYA6 745 aa7.25□□□□□ -1.25
VPS13C-208ENST00000559119 FBXW5Q969U6 566 aa7.25□□□□□ -1.25
VPS13C-208ENST00000559119 ADOQ96SZ5 270 aa7.25□□□□□ -1.25
VPS13C-208ENST00000559119 ZNF341Q9BYN7 854 aa7.25□□□□□ -1.25
VPS13C-208ENST00000559119 HS3ST3A1Q9Y663 406 aa7.25□□□□□ -1.25
VPS13C-208ENST00000559119 ATP23Q9Y6H3 246 aa7.25□□□□□ -1.25
VPS13C-208ENST00000559119 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-208ENST00000559119 FAM90A27PA6NNH2 459 aa7.24□□□□□ -1.25
VPS13C-208ENST00000559119 ST5P78524 1137 aa7.24□□□□□ -1.25
VPS13C-208ENST00000559119 TOP3AQ13472 1001 aaPredicted RBP7.24□□□□□ -1.25
VPS13C-208ENST00000559119 WDR72Q3MJ13 1102 aa7.24□□□□□ -1.25
VPS13C-208ENST00000559119 ZMAT1Q5H9K5 638 aa7.24□□□□□ -1.25
VPS13C-208ENST00000559119 SPATC1Q76KD6 591 aa7.24□□□□□ -1.25
VPS13C-208ENST00000559119 PTPRN2Q92932 1015 aa7.24□□□□□ -1.25
VPS13C-208ENST00000559119 ZNF428Q96B54 188 aa7.24□□□□□ -1.25
VPS13C-208ENST00000559119 TRBV23-1A0A0A0MS06 115 aa7.23□□□□□ -1.25
VPS13C-208ENST00000559119 PDPK1O15530 556 aa7.23□□□□□ -1.25
VPS13C-208ENST00000559119 COMTP21964 271 aa7.23□□□□□ -1.25
VPS13C-208ENST00000559119 GJA4P35212 333 aa7.23□□□□□ -1.25
VPS13C-208ENST00000559119 RRADP55042 308 aa7.23□□□□□ -1.25
VPS13C-208ENST00000559119 SUMO1P63165 101 aaKnown RBP7.23□□□□□ -1.25
VPS13C-208ENST00000559119 MTERF2Q49AM1 385 aa7.23□□□□□ -1.25
VPS13C-208ENST00000559119 PTRH1Q86Y79 214 aaKnown RBP7.23□□□□□ -1.25
VPS13C-208ENST00000559119 PPP1R1BQ9UD71 204 aaPredicted RBP7.23□□□□□ -1.25
VPS13C-208ENST00000559119 PCDHA8Q9Y5H6 950 aa7.23□□□□□ -1.25
VPS13C-208ENST00000559119 MAN2B1O00754 1011 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 WNT9AO14904 365 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 GSTA4O15217 222 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 PYGMP11217 842 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 NAT1P18440 290 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 KRT15P19012 456 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 CR2P20023 1033 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 GUCY1A3Q02108 690 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 SSRP1Q08945 709 aaKnown RBP7.22□□□□□ -1.25
VPS13C-208ENST00000559119 FIGNQ5HY92 759 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 OSTM1Q86WC4 334 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 FUKQ8N0W3 1084 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 PCDH19Q8TAB3 1148 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 SCYL1Q96KG9 808 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 PFDN2Q9UHV9 154 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 OAZ3Q9UMX2 235 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 NR2E1Q9Y466 385 aa7.22□□□□□ -1.25
VPS13C-208ENST00000559119 SRGAP2CP0DJJ0 459 aa7.21□□□□□ -1.26
VPS13C-208ENST00000559119 PDE6AP16499 860 aa7.21□□□□□ -1.26
VPS13C-208ENST00000559119 PTGS1P23219 599 aa7.21□□□□□ -1.26
VPS13C-208ENST00000559119 ETV4P43268 484 aa7.21□□□□□ -1.26
VPS13C-208ENST00000559119 CRY1Q16526 586 aa7.21□□□□□ -1.26
VPS13C-208ENST00000559119 RNF151Q2KHN1 245 aa7.21□□□□□ -1.26
VPS13C-208ENST00000559119 NRN1LQ496H8 165 aa7.21□□□□□ -1.26
VPS13C-208ENST00000559119 C16orf59Q7L2K0 433 aa7.21□□□□□ -1.26
VPS13C-208ENST00000559119 WDR48Q8TAF3 677 aa7.21□□□□□ -1.26
VPS13C-208ENST00000559119 EDAQ92838 391 aa7.21□□□□□ -1.26
VPS13C-208ENST00000559119 INCENPQ9NQS7 918 aa7.21□□□□□ -1.26
VPS13C-208ENST00000559119 FBXO10Q9UK96 956 aa7.21□□□□□ -1.26
VPS13C-208ENST00000559119 MSRB2Q9Y3D2 182 aa7.21□□□□□ -1.26
VPS13C-208ENST00000559119 PRAMEF25A6NGN4 478 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms