RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 PPFIA4O75335 1185 aa10.98□□□□□ -0.65
SPG11-214ENST00000558989 CDKL5O76039 1030 aa10.98□□□□□ -0.65
SPG11-214ENST00000558989 FAM86B2P0C5J1 330 aa10.98□□□□□ -0.65
SPG11-214ENST00000558989 TCF7P36402 384 aaPredicted RBP10.98□□□□□ -0.65
SPG11-214ENST00000558989 SREBF1P36956 1147 aa10.98□□□□□ -0.65
SPG11-214ENST00000558989 CEP55Q53EZ4 464 aa10.98□□□□□ -0.65
SPG11-214ENST00000558989 PPP1R15BQ5SWA1 713 aa10.98□□□□□ -0.65
SPG11-214ENST00000558989 PPP2R2DQ66LE6 453 aa10.98□□□□□ -0.65
SPG11-214ENST00000558989 MFSD5Q6N075 450 aa10.98□□□□□ -0.65
SPG11-214ENST00000558989 NFRKBQ6P4R8 1299 aa10.98□□□□□ -0.65
SPG11-214ENST00000558989 TRMT1LQ7Z2T5 733 aaKnown RBP10.98□□□□□ -0.65
SPG11-214ENST00000558989 CCDC83Q8IWF9 413 aa10.98□□□□□ -0.65
SPG11-214ENST00000558989 TMEM199Q8N511 208 aa10.98□□□□□ -0.65
SPG11-214ENST00000558989 C16orf70Q9BSU1 422 aa10.98□□□□□ -0.65
SPG11-214ENST00000558989 NOC4LQ9BVI4 516 aaKnown RBP10.98□□□□□ -0.65
SPG11-214ENST00000558989 ORC3Q9UBD5 711 aaPredicted RBP10.98□□□□□ -0.65
SPG11-214ENST00000558989 ESYT2A0FGR8 921 aa10.97□□□□□ -0.65
SPG11-214ENST00000558989 H3BRB1 525 aa10.97□□□□□ -0.65
SPG11-214ENST00000558989 F2P00734 622 aa10.97□□□□□ -0.65
SPG11-214ENST00000558989 SUPT20HL2P0C7V6 817 aa10.97□□□□□ -0.65
SPG11-214ENST00000558989 PRR16Q569H4 304 aa10.97□□□□□ -0.65
SPG11-214ENST00000558989 BICD2Q8TD16 824 aa10.97□□□□□ -0.65
SPG11-214ENST00000558989 GTF3C6Q969F1 213 aa10.97□□□□□ -0.65
SPG11-214ENST00000558989 GJA10Q969M2 543 aa10.97□□□□□ -0.65
SPG11-214ENST00000558989 CDHR1Q96JP9 859 aa10.97□□□□□ -0.65
SPG11-214ENST00000558989 RNPC3Q96LT9 517 aaKnown RBP10.97□□□□□ -0.65
SPG11-214ENST00000558989 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.97□□□□□ -0.65
SPG11-214ENST00000558989 SDF4Q9BRK5 362 aa10.97□□□□□ -0.65
SPG11-214ENST00000558989 KATNAL1Q9BW62 490 aa10.97□□□□□ -0.65
SPG11-214ENST00000558989 WNT8AQ9H1J5 351 aa10.97□□□□□ -0.65
SPG11-214ENST00000558989 TUT1Q9H6E5 874 aaKnown RBP10.97□□□□□ -0.65
SPG11-214ENST00000558989 METTL14Q9HCE5 456 aaKnown RBP10.97□□□□□ -0.65
SPG11-214ENST00000558989 PCDHA4Q9UN74 947 aa10.97□□□□□ -0.65
SPG11-214ENST00000558989 ITGB3BPQ13352 177 aaPredicted RBP10.96□□□□□ -0.65
SPG11-214ENST00000558989 PPIGQ13427 754 aaKnown RBP eCLIP10.96□□□□□ -0.65
SPG11-214ENST00000558989 ZNF365Q70YC5 407 aa10.96□□□□□ -0.65
SPG11-214ENST00000558989 OTOP2Q7RTS6 562 aa10.96□□□□□ -0.65
SPG11-214ENST00000558989 BLIDQ8IZY5 108 aa10.96□□□□□ -0.65
SPG11-214ENST00000558989 GLG1Q92896 1179 aa10.96□□□□□ -0.65
SPG11-214ENST00000558989 KIF2CQ99661 725 aa10.96□□□□□ -0.65
SPG11-214ENST00000558989 SENP7Q9BQF6 1050 aa10.96□□□□□ -0.65
SPG11-214ENST00000558989 AGO4Q9HCK5 861 aaKnown RBP10.96□□□□□ -0.65
SPG11-214ENST00000558989 JPH1Q9HDC5 661 aaPredicted RBP10.96□□□□□ -0.65
SPG11-214ENST00000558989 SLC9A2Q9UBY0 812 aa10.96□□□□□ -0.65
SPG11-214ENST00000558989 GTF2IRD1Q9UHL9 959 aa10.96□□□□□ -0.65
SPG11-214ENST00000558989 GSTTP1A0A1W2PQM5 241 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 SMIM10L2AP0DMW4 78 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 SMIM10L2BP0DMW5 78 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 IGBP1P78318 339 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 ST3GAL1Q11201 340 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 CCDC181Q5TID7 509 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 Q7L0L9 218 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 C16orf59Q7L2K0 433 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 NPAS4Q8IUM7 802 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 GIMAP8Q8ND71 665 aaPredicted RBP10.95□□□□□ -0.66
SPG11-214ENST00000558989 TBCKQ8TEA7 893 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 FAM161BQ96MY7 647 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 UPF2Q9HAU5 1272 aaKnown RBP10.95□□□□□ -0.66
SPG11-214ENST00000558989 SH3GLB2Q9NR46 395 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 SETD4Q9NVD3 440 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 A0A1W2PPC1 479 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 C17orf102A2RUQ5 167 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 ZBBXA8MT70 800 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 HAS3O00219 553 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 MEIS1O00470 390 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 FDPSP14324 419 aaKnown RBP10.95□□□□□ -0.66
SPG11-214ENST00000558989 GUCY1B3Q02153 619 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 INF2Q27J81 1249 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 SEPT1Q8WYJ6 367 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 DHX38Q92620 1227 aaKnown RBP10.95□□□□□ -0.66
SPG11-214ENST00000558989 ATP6V0A1Q93050 837 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 WNT8BQ93098 351 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 ZBTB10Q96DT7 871 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 CTAGE1Q96RT6 745 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 ZNF577Q9BSK1 485 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 SEZ6LQ9BYH1 1024 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 FTOQ9C0B1 505 aaKnown RBP eCLIP10.95□□□□□ -0.66
SPG11-214ENST00000558989 RNPEPQ9H4A4 650 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 ZNF215Q9UL58 517 aaPredicted RBP10.95□□□□□ -0.66
SPG11-214ENST00000558989 PCDHB8Q9UN66 801 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 LIMCH1Q9UPQ0 1083 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 TMA7Q9Y2S6 64 aaKnown RBP10.95□□□□□ -0.66
SPG11-214ENST00000558989 PCDHB13Q9Y5F0 798 aa10.95□□□□□ -0.66
SPG11-214ENST00000558989 IGLV3-22A0A075B6J6 115 aa10.94□□□□□ -0.66
SPG11-214ENST00000558989 GRXCR1A8MXD5 290 aa10.94□□□□□ -0.66
SPG11-214ENST00000558989 BACH1O14867 736 aa10.94□□□□□ -0.66
SPG11-214ENST00000558989 TREHO43280 583 aa10.94□□□□□ -0.66
SPG11-214ENST00000558989 CHMP2AO43633 222 aa10.94□□□□□ -0.66
SPG11-214ENST00000558989 TDP2O95551 362 aa10.94□□□□□ -0.66
SPG11-214ENST00000558989 HOXD8P13378 290 aaPredicted RBP10.94□□□□□ -0.66
SPG11-214ENST00000558989 XBP1P17861 261 aa10.94□□□□□ -0.66
SPG11-214ENST00000558989 ACTR2P61160 394 aa10.94□□□□□ -0.66
SPG11-214ENST00000558989 PTPN11Q06124 597 aaPredicted RBP10.94□□□□□ -0.66
SPG11-214ENST00000558989 TMEM240Q5SV17 173 aa10.94□□□□□ -0.66
SPG11-214ENST00000558989 NSUN7Q8NE18 718 aaKnown RBP10.94□□□□□ -0.66
SPG11-214ENST00000558989 IL17RAQ96F46 866 aa10.94□□□□□ -0.66
SPG11-214ENST00000558989 IL23AQ9NPF7 189 aa10.94□□□□□ -0.66
SPG11-214ENST00000558989 TCEAL9Q9UHQ7 104 aa10.94□□□□□ -0.66
SPG11-214ENST00000558989 STK36Q9NRP7 1315 aa10.94□□□□□ -0.66
SPG11-214ENST00000558989 CCDC194A0A1B0GVG4 234 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms